Browse Element(s) Details


OsAffx.25764.4.S1_at

Description tigr:9631.m05821
TID=OsAffx.25764.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative cell death suppressor protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5915211/11lethal leaf spot 1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59120OsAffx.25764.3.S1_at11/113+33598501..33600888Rieske domain containing protein, expressed
LOC_Os03g59140OsAffx.22848.3.S1_x_at2/113+33606647..33611287retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g59146OsAffx.8602.1.S1_s_at11/113+33619812..33624465hypothetical protein
LOC_Os03g59146OsAffx.8602.1.S1_x_at6/113+33619812..33624465hypothetical protein
LOC_Os03g59146Os.46735.1.S1_at4/113+33619812..33624465hypothetical protein
LOC_Os03g59152OsAffx.25764.4.S1_at11/113+33624739..33626671lethal leaf spot 1, putative
LOC_Os03g59152OsAffx.2812.1.S1_at1/113+33624739..33626671lethal leaf spot 1, putative
LOC_Os03g59160Os.25442.1.S1_at7/113+33627208..33631182Elongation factor P family protein, expressed
LOC_Os03g59170Os.16646.1.A1_at11/113+33632042..33635164adenosine 5'-phosphosulfate reductase 8, putative, expressed
LOC_Os03g59180Os.31151.2.S1_at11/113+33636039..33637411expressed protein
LOC_Os03g59190OsAffx.8923.1.S1_at9/113+33641413..33646074retrotransposon protein, putative, unclassified
LOC_Os03g59190Os.51887.1.S1_x_at1/113+33641413..33646074retrotransposon protein, putative, unclassified
LOC_Os03g59200Os.49605.1.A1_at11/113+33650407..33652500expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008219biological_processcell death
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0009908biological_processflower development
GO:0010154biological_processfruit development
GO:0015996biological_processchlorophyll catabolism
GO:0009055molecular_functionelectron carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25764.4.S1_at--355--3531Chr03:33626176..33626200 (25 bp)
CATGCAGTGCACCAGTTGTAGAGCT
LOC_Os03g59152
OsAffx.25764.4.S1_at--586--8891Chr03:33626214..33626238 (25 bp)
TGAGGGCTCTGGAGATCACCTTGCA
LOC_Os03g59152
OsAffx.25764.4.S1_at--705--8871Chr03:33626292..33626316 (25 bp)
TGATGTCGGGTGTCCAGAGAGCTTC
LOC_Os03g59152
OsAffx.25764.4.S1_at--908--8851Chr03:33626389..33626413 (25 bp)
TGATGCGTCCATCCAGGAAATCTGT
LOC_Os03g59152
OsAffx.25764.4.S1_at--971--3051Chr03:33626407..33626431 (25 bp)
AATCTGTGATGTGTTGCTGTTGCTA
LOC_Os03g59152
OsAffx.25764.4.S1_at--133--5231Chr03:33626433..33626457 (25 bp)
GAATTTGTCATGAACCTGGGCTCAG
LOC_Os03g59152
OsAffx.25764.4.S1_at--786--4871Chr03:33626463..33626487 (25 bp)
GCTTTAGACTGCACCGTTTGGCTGT
LOC_Os03g59152
OsAffx.25764.4.S1_at--924--3751Chr03:33626488..33626512 (25 bp)
CTCTTGGCCTAGTTGGTTCAGGGAT
LOC_Os03g59152
OsAffx.25764.4.S1_at--1148--10431Chr03:33626546..33626570 (25 bp)
TTATGGCCATGTGTGTGCGTTATAC
LOC_Os03g59152
OsAffx.25764.4.S1_at--919--10411Chr03:33626565..33626589 (25 bp)
TTATACATGCAGAGGCCAGGCCGGG
LOC_Os03g59152
OsAffx.25764.4.S1_at--299--7671Chr03:33626588..33626612 (25 bp)
GGGATACAATCATTTTCCTTGTCTA
LOC_Os03g59152
Target Sequence 
CATGCAGTGCACCAGTTGTAGAGCTGCACTGAAGGGGATGAGGGCTCTGGAGATCACCTTGCAGGTGGCGGCGGTCGCCG
TCGTCGGGTTCCTCGCCGCCGGCAAGGAGACGGCGGTGATGTCGGGTGTCCAGAGAGCTTCGCCGCCTCCCGCTGGCTCG
CCAACTTCATCGAGAAGACCTTCTATTTCCAGGATTATGTCCATGCTGACAAATGATGCGTCCATCCAGGAAATCTGTGA
TGTGTTGCTGTTGCTAGGAATTTGTCATGAACCTGGGCTCAGGAGGGGCTTTAGACTGCACCGTTTGGCTGTCTCTTGGC
CTAGTTGGTTCAGGGATGCAGCTATAAATCAGCAGCCAAAACTCGAAACTTTATGGCCATGTGTGTGCGTTATACATGCA
GAGGCCAGGCCGGGGATACAATCATTTTCCTTGTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25764.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis