Browse Element(s) Details


OsAffx.25794.1.S1_at

Description tigr:9631.m06154
TID=OsAffx.25794.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g623401/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62290Os.57380.1.S1_at11/113+35227584..35228334expressed protein
LOC_Os03g62300OsAffx.13582.1.S1_at5/113+35230578..35238629hypothetical protein
LOC_Os03g62314OsAffx.8801.1.S1_at2/113+35243125..35248319retrotransposon protein, putative, LINE subclass
LOC_Os03g62330Os.56918.1.S1_at11/113+35248789..35249685expressed protein
LOC_Os03g62340Os.9205.1.S1_x_at11/113+35251687..35256292Protein kinase domain containing protein, expressed
LOC_Os03g62340Os.9205.1.S1_s_at11/113+35251687..35256292Protein kinase domain containing protein, expressed
LOC_Os03g62340OsAffx.25794.1.S1_at1/113+35251687..35256292Protein kinase domain containing protein, expressed
LOC_Os03g62350Os.35344.18.S1_x_at9/113+35265693..35267285hypothetical protein
LOC_Os03g62350Os.35344.3.S1_x_at9/113+35265693..35267285hypothetical protein
LOC_Os03g62350OsAffx.22940.5.S1_x_at3/113+35265693..35267285hypothetical protein
LOC_Os03g62360NANA3+35268944..35269576hypothetical protein
LOC_Os03g62370Os.49694.1.S1_at11/113+35271028..35273340WD40-like Beta Propeller Repeat family protein, expressed
LOC_Os03g62379OsAffx.25795.1.S1_at10/113+35274340..35276037Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g62388OsAffx.3674.1.S1_at11/113+35276862..35279517hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25794.1.S1_at--609--1331Chr03:35243075..35243144 (25 bp)
AGAGGATGATCCTTGCTATGCACAA
NONE
OsAffx.25794.1.S1_at--1012--6351Chr03:35243068..35243089 (22 bp)
GATCCTTGCTATGCACAAGGACATC
NONE
OsAffx.25794.1.S1_at--648--671Chr03:35242907..35242931 (25 bp)
ATGACGAAACGATCCACTGACCACT
NONE
OsAffx.25794.1.S1_at--1132--8911Chr03:35242890..35242914 (25 bp)
TGACCACTGGGCAAGGTCCCACGTC
NONE
OsAffx.25794.1.S1_at--431--7611Chr03:35242882..35242906 (25 bp)
GGGCAAGGTCCCACGTCACCGCGAG
NONE
OsAffx.25794.1.S1_at--127--3731Chr03:35242681..35242705 (25 bp)
CTGCTACTTTTTTCTTAACCACCAT
NONE
OsAffx.25794.1.S1_at--1014--4351Chr03:35242663..35242687 (25 bp)
CCACCATTTGTGATTTGTTCTGATT
NONE
OsAffx.25794.1.S1_at--701--5272Chr03:35242627..35242651 (25 bp)
GAATGGGAGCTGTGTATAGAGTCTC
NONE
OsAffx.25794.1.S1_at--1006--991Chr03:35242527..35242551 (25 bp)
AGGATGATATGCACATTCAGATGGC
NONE
OsAffx.25794.1.S1_at--581--111Chr03:35242513..35242537 (25 bp)
ATTCAGATGGCAGAAGGCAGATGTA
NONE
OsAffx.25794.1.S1_at--612--8411Chr03:35242447..35242471 (25 bp)
GGCCCTACTTGGTATGTAGCACTGA
NONE
Target Sequence 
AGAGGATGATCCTTGCTATGCACAAGGACATCTTCTCATTCCCGACCGGAAATGTCACAGATTTTGAAACTGCTTGAAGG
AGATGACGAAACGATCCACTGACCACTGGGCAAGGTCCCACGTCACCGCGAGCTTCGACGGATCAGACGAGGAGGCTGTG
GCGGCTCCTGACTCAAACATGCAGTCACACCTGAACCTCGCGTTGCTGGGCGTGGAGGATGACACCCTCTCGCACTGCAG
CACTGAACAGACCATGGACACTTCAGCTGACGGGTACTGGAGCCGGTCATCGAGCTTCGACTAACCTCCTGCTACTTTTT
TCTTAACCACCATTTGTGATTTGTTCTGATTTTGAGCCATGTGAATGGGAGCTGTGTATAGAGTCTCTCAATTCTCATAC
CTTTGCTACTGCTGTTGTTGTGTCGATTGGTTGGAATGGTGAATGGAAAGAAAGTGGATTGGAGGATGATATGCACATTC
AGATGGCAGAAGGCAGATGTAGTAGCTTAGGAATTGTGGTAGATCTAACCCTACTGGCCTTTGGCCCTACTTGGTATGTA
GCACTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25794.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis