Browse Element(s) Details


OsAffx.25795.1.S1_at

Description tigr:9631.m06161
TID=OsAffx.25795.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Myb-like DNA-binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6237910/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62330Os.56918.1.S1_at11/113+35248789..35249685expressed protein
LOC_Os03g62340Os.9205.1.S1_x_at11/113+35251687..35256292Protein kinase domain containing protein, expressed
LOC_Os03g62340Os.9205.1.S1_s_at11/113+35251687..35256292Protein kinase domain containing protein, expressed
LOC_Os03g62340OsAffx.25794.1.S1_at1/113+35251687..35256292Protein kinase domain containing protein, expressed
LOC_Os03g62350Os.35344.18.S1_x_at9/113+35265693..35267285hypothetical protein
LOC_Os03g62350Os.35344.3.S1_x_at9/113+35265693..35267285hypothetical protein
LOC_Os03g62350OsAffx.22940.5.S1_x_at3/113+35265693..35267285hypothetical protein
LOC_Os03g62360NANA3+35268944..35269576hypothetical protein
LOC_Os03g62370Os.49694.1.S1_at11/113+35271028..35273340WD40-like Beta Propeller Repeat family protein, expressed
LOC_Os03g62379OsAffx.25795.1.S1_at10/113+35274340..35276037Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g62388OsAffx.3674.1.S1_at11/113+35276862..35279517hypothetical protein
LOC_Os03g62400OsAffx.25796.1.S1_at10/113+35284103..35287960pentatricopeptide, putative
LOC_Os03g62410Os.52881.1.S1_at11/113+35289129..35293830Phospholipase D gamma 3, putative, expressed
LOC_Os03g62420OsAffx.13583.1.S1_at11/113+35295028..35297793expressed protein
LOC_Os03g62430Os.49388.1.S1_at9/113+35299723..35304099Calcium binding EGF domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25795.1.S1_at--1063--4891Chr03:35275377..35275396 (20 bp)
GCTTAAGCACCTCCCAATTTGGAGA
LOC_Os03g62379
OsAffx.25795.1.S1_at--621--3271Chr03:35275246..35275270 (25 bp)
CAAACACGAGCCAAATGGTCCAAAT
LOC_Os03g62379
OsAffx.25795.1.S1_at--987--10451Chr03:35275073..35275229 (25 bp)
TTACGAGGGTCTTCAACAATTTGGT
LOC_Os03g62379
OsAffx.25795.1.S1_at--764--9011Chr03:35275040..35275064 (25 bp)
TGCAATGATACAGCATCTCTTCCCT
LOC_Os03g62379
OsAffx.25795.1.S1_at--947--451Chr03:35275026..35275050 (25 bp)
ATCTCTTCCCTGATAAGAGCCGTAA
LOC_Os03g62379
OsAffx.25795.1.S1_at--81--2771Chr03:35275012..35275036 (25 bp)
AAGAGCCGTAATCAGGTGCGACAAA
LOC_Os03g62379
OsAffx.25795.1.S1_at--391--591Chr03:35274963..35274987 (25 bp)
ATCCAATGCAAGTTCATGATGCCAT
LOC_Os03g62379
OsAffx.25795.1.S1_at--998--9191NONE
TGCCATAATGCATCGCTCGAGAGAT
NONE
OsAffx.25795.1.S1_at--829--2091Chr03:35274797..35274821 (25 bp)
ACATCGAAGATGTCCAGCCAGATAT
LOC_Os03g62379
OsAffx.25795.1.S1_at--946--8131Chr03:35274572..35274596 (25 bp)
GGACATGCACAGATCTGAGGTCGAA
LOC_Os03g62379
OsAffx.25795.1.S1_at--654--2911Chr03:35274544..35274568 (25 bp)
AAGGAGCACGTTTCTACAAATGATG
LOC_Os03g62379
Target Sequence 
GCTTAAGCACCTCCCAATTTGGAGATATGGATGATGAGTATAACGAACAAGACAACTGGGACAACGACAGGACTGAGAAT
CATGTGGTCGAAAATACAACCAAACTTAATTACCATTCATACATGAACAGACAAACACGAGCCAAATGGTCCAAATCTGA
AACGGACAAGTTTTACGAGGGTCTTCAACAATTTGGTAGCGATTTTGCAATGATACAGCATCTCTTCCCTGATAAGAGCC
GTAATCAGGTGCGACAAAAATTTAAAGCTGAGGAGAAAAAACATCCAATGCAAGTTCATGATGCCATAATGCATCGCTCG
AGAGATAATTTGTATTTTAAAGAAGTAATCAAAAAGCTCAACATCGAAGATGTCCAGCCAGATATCAACAATACACATGA
ACAGGAGGGTACATCAAATGAAGAGGACCCTGGAAATAAGAATATACCGGGTGGATTAATTAATGAGGAGGAAGAAAATG
GTTTAGATTGGTCAGATAAAGAGCTGGACATGCACAGATCTGAGGTCGAAGAGAAGGAGCACGTTTCTACAAATGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25795.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis