Browse Element(s) Details


OsAffx.25806.1.S1_at

Description tigr:9631.m06249
TID=OsAffx.25806.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6316011/11hypothetical protein
LOC_Os03g631402/11Nitrate-induced NOI protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63124Os.28346.5.S1_at11/113+35616990..35624977retrotransposon protein, putative, unclassified
LOC_Os03g63124Os.28346.5.S1_x_at11/113+35616990..35624977retrotransposon protein, putative, unclassified
LOC_Os03g63124Os.28346.3.S1_x_at10/113+35616990..35624977retrotransposon protein, putative, unclassified
LOC_Os03g63124Os.28346.4.S1_x_at8/113+35616990..35624977retrotransposon protein, putative, unclassified
LOC_Os03g63140Os.8727.1.S1_at10/113+35628426..35631287Nitrate-induced NOI protein, expressed
LOC_Os03g63140OsAffx.25806.1.S1_at2/113+35628426..35631287Nitrate-induced NOI protein, expressed
LOC_Os03g63150Os.35787.2.S1_at11/113+35632219..35637943powdery mildew resistance protein PM3b, putative, expressed
LOC_Os03g63150Os.35787.1.S1_at11/113+35632219..35637943powdery mildew resistance protein PM3b, putative, expressed
LOC_Os03g63150Os.35787.1.S1_x_at11/113+35632219..35637943powdery mildew resistance protein PM3b, putative, expressed
LOC_Os03g63160OsAffx.25806.1.S1_at11/113+35641868..35642997hypothetical protein
LOC_Os03g63170OsAffx.5116.1.S1_at10/113+35643625..35645941transposon protein, putative, unclassified
LOC_Os03g63190NANA3+35648360..35649242hypothetical protein
LOC_Os03g63200Os.44928.1.S1_at11/113+35650256..35654709powdery mildew resistance protein PM3b, putative, expressed
LOC_Os03g63210OsAffx.25807.1.S1_at11/113+35657592..35658741hypothetical protein
LOC_Os03g63210Os.52410.1.S1_x_at1/113+35657592..35658741hypothetical protein
LOC_Os03g63220Os.44928.1.S1_at2/113+35664909..35666128Leucine Rich Repeat family protein
LOC_Os03g63220Os.35787.1.S1_x_at2/113+35664909..35666128Leucine Rich Repeat family protein
LOC_Os03g63230OsAffx.22641.1.S1_at11/113+35666801..35668212retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
GO:0009626biological_processhypersensitive response
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25806.1.S1_at--1052--7132Chr03:35641898..35641922 (25 bp)
GTCTTTGATACACGTGGCGTTGACG
LOC_Os03g63160
OsAffx.25806.1.S1_at--968--6654Chr06:2074399..2074673 (25 bp)
GTTGACGTGGCACTTACGCAAGCTG
NONE
OsAffx.25806.1.S1_at--183--9211Chr03:35641939..35641961 (23 bp)
TGCCAGCCATCCTAATGTCACGTGT
LOC_Os03g63160
OsAffx.25806.1.S1_at--42--7111Chr03:35642557..35642576 (20 bp)
GTCACGTGTTTCTTTATTCTTCCTA
LOC_Os03g63160
OsAffx.25806.1.S1_at--217--10211Chr03:35642566..35642590 (25 bp)
TATTCTTCCTATTAAACTTTACCAG
LOC_Os03g63160
OsAffx.25806.1.S1_at--877--2032Chr03:35642581..35642605 (25 bp)
ACTTTACCAGCATAAAGGAGTTCCT
LOC_Os03g63160
OsAffx.25806.1.S1_at--476--5171Chr03:35642673..35642693 (21 bp)
GCAAGGGTAAATCTCAAGGAGCAGT
LOC_Os03g63160
OsAffx.25806.1.S1_at--1113--951Chr03:35642748..35642769 (22 bp)
AGGAGCAGTGAGAAAACCCAAGGAT
LOC_Os03g63160
OsAffx.25806.1.S1_at--651--291Chr03:35642864..35642888 (25 bp)
ATACCAACTACGACAATGCCGTGAG
LOC_Os03g63160
OsAffx.25806.1.S1_at--253--5972Chr03:35642902..35642926 (25 bp)
GAGAAGTCACCCGTTCATAAGTTCA
LOC_Os03g63160
OsAffx.25806.1.S1_at--318--7091Chr03:35642907..35642931 (25 bp)
GTCACCCGTTCATAAGTTCATTGGA
LOC_Os03g63160
Target Sequence 
GTCTTTGATACACGTGGCGTTGACGTGGCACTTACGCAAGCTGCCAGCCATCCTAATGTCACGTGTTTCTTTATTCTTCC
TATTAAACTTTACCAGCATAAAGGAGTTCCTAAATTTGGAAGCTGGGAGGATGAAGACCGTGGTGAACACCTCTACACAC
AGTATTTCGAAAATGCCCGCAAGGGTAAATCTCAAGGAGCAGTGAGAAAACCCAAGGATGACAGACGCTCAAACCGAGAA
GACGATCTTCGTCAGCACGAAACCACTGTTCGAAAACCATATGCTGAGTCACCTAATCATAGATATAGGGATCATACCAA
CTACGACAATGCCGTGAGAAAAACCGGCATAGAGAAGTCACCCGTTCATAAGTTCATTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25806.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis