Browse Element(s) Details


OsAffx.25819.1.S1_at

Description tigr:9635.m02360
TID=OsAffx.25819.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=non-LTR retroelement reverse transcriptase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2468011/11hypothetical protein
LOC_Os09g011303/11hypothetical protein
LOC_Os11g230602/11retrotransposon, putative, centromere-specific
LOC_Os05g409401/11hypothetical protein
LOC_Os04g011241/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g24640OsAffx.30435.1.S1_at3/117+14016279..14019884retrotransposon protein, putative, unclassified
LOC_Os07g24640OsAffx.18375.1.S1_at1/117+14016279..14019884retrotransposon protein, putative, unclassified
LOC_Os07g24640OsAffx.20553.1.S1_at1/117+14016279..14019884retrotransposon protein, putative, unclassified
LOC_Os07g24640OsAffx.19776.1.S1_at1/117+14016279..14019884retrotransposon protein, putative, unclassified
LOC_Os07g24640OsAffx.22699.1.S1_x_at1/117+14016279..14019884retrotransposon protein, putative, unclassified
LOC_Os07g24660NANA7+14025073..14027694retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g24670OsAffx.940.1.S1_x_at1/117+14034263..14036516retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g24680OsAffx.25819.1.S1_at11/117+14038985..14040936hypothetical protein
LOC_Os07g24680OsAffx.25819.3.S1_at3/117+14038985..14040936hypothetical protein
LOC_Os07g24690NANA7+14042130..14045067retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g24700NANA7+14050247..14055381retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g24710NANA7+14056163..14056597hypothetical protein
LOC_Os07g24720Os.24831.1.S1_x_at6/117+14058548..14061212retrotransposon protein, putative, unclassified
LOC_Os07g24720Os.24831.3.S1_x_at6/117+14058548..14061212retrotransposon protein, putative, unclassified
LOC_Os07g24720Os.24831.4.S1_x_at4/117+14058548..14061212retrotransposon protein, putative, unclassified
LOC_Os07g24720Os.24831.3.S1_s_at1/117+14058548..14061212retrotransposon protein, putative, unclassified
LOC_Os07g24730NANA7+14063353..14064009hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25819.1.S1_at--356--553Chr07:14040195..14040371 (25 bp)
ATCCTCCACGAGATTATTGTACCCT
LOC_Os07g24680
OsAffx.25819.1.S1_at--540--271Chr07:14040464..14040488 (25 bp)
ATATGGACATACAACGTAAACGTTT
LOC_Os07g24680
OsAffx.25819.1.S1_at--985--9534Chr11:12783944..12783967 (24 bp)
TCTATCCTCAATATTTGTGTTGCAG
LOC_Os11g23060
OsAffx.25819.1.S1_at--94--8811Chr07:14040591..14040615 (25 bp)
TGTTGCAGGAGCAGCCTTCTGTCTT
LOC_Os07g24680
OsAffx.25819.1.S1_at--489--3651Chr07:14040606..14040630 (25 bp)
CTTCTGTCTTCACCAAATTCCAAGT
LOC_Os07g24680
OsAffx.25819.1.S1_at--941--10631Chr07:14040623..14040647 (25 bp)
TTCCAAGTATGGGTAGTGATGACGA
LOC_Os07g24680
OsAffx.25819.1.S1_at--455--3311Chr07:14040701..14040725 (25 bp)
CACATGGGCCAAACCCTCAGGATAA
LOC_Os07g24680
OsAffx.25819.1.S1_at--750--2371Chr07:14040711..14040735 (25 bp)
AAACCCTCAGGATAATGGTGAAGAA
LOC_Os07g24680
OsAffx.25819.1.S1_at--346--1692Chr07:14040812..14040836 (25 bp)
AGCCATGGATATCAGTGAACCTAGC
LOC_Os07g24680
OsAffx.25819.1.S1_at--1086--7332Chr11:12784188..12784357 (25 bp)
GTGAACCTAGCCAAGAACCTAAAAT
LOC_Os11g23060
OsAffx.25819.1.S1_at--1081--3712Chr07:14040844..14040868 (25 bp)
CTAAAATACTCAGGCCAAATCGGGT
LOC_Os07g24680
Target Sequence 
ATCCTCCACGAGATTATTGTACCCTCCAGAATGTGGATTATCATGAACAACCAGTAAAAGCAACTATGTCCATCTGGATG
GAAGCCGTGGATGATATGTATGAAGAAGCTTTGGAACATATGGACATACAACGTAAACGTTTGGAGGAAGCTGAACACAG
AGAAGCTGTTCTCAAACACAAATATCGTATACTTCATGAATTATATGAGGAAAGGGAAAAACAAAATTCTATCCTCAATA
TTTGTGTTGCAGGAGCAGCCTTCTGTCTTCACCAAATTCCAAGTATGGGTAGTGATGACGAAGACGATGAAGGTGGTATG
GAAGGACATATCTCACCAGTACGTGAAGGTGAACCACATGGGCCAAACCCTCAGGATAATGGTGAAGAATTTTACAAGGT
TTACCACCATCACCACCACCGTTGTATCCTATTCATTCTGATGACGAAGCAGAAGAAATGCATTCAGCCATGGATATCAG
TGAACCTAGCCAAGAACCTAAAATACTCAGGCCAAATCGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25819.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis