Browse Element(s) Details


OsAffx.25834.1.S1_at

Description tigr:9632.m00110
TID=OsAffx.25834.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0206011/11hypothetical protein
LOC_Os09g111401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g02020OsAffx.13618.1.S1_at11/114+623838..624134hypothetical protein
LOC_Os04g02030OsAffx.25832.1.S1_at11/114+630343..633741NB-ARC domain containing protein
LOC_Os04g02040OsAffx.25833.1.S1_at11/114+634634..634948truncated rp1-4 protein, putative
LOC_Os04g02050Os.18856.1.S1_at9/114+636698..640221Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthethase 2, putative, expressed
LOC_Os04g02060OsAffx.25834.1.S1_at11/114+648010..648949hypothetical protein
LOC_Os04g02070Os.54121.1.S1_s_at11/114+651744..658081expressed protein
LOC_Os04g02070Os.54121.1.S2_s_at11/114+651744..658081expressed protein
LOC_Os04g02080Os.45212.1.S1_x_at7/114+661177..663165retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g02090OsAffx.25156.4.S1_x_at11/114+664174..667203hypothetical protein
LOC_Os04g02090OsAffx.25156.1.S1_x_at4/114+664174..667203hypothetical protein
LOC_Os04g02090OsAffx.25156.5.S1_x_at3/114+664174..667203hypothetical protein
LOC_Os04g02100OsAffx.25836.1.S1_at11/114+670089..671527hypothetical protein
LOC_Os04g02110Os.6093.2.S2_at11/114+671654..678229NB-ARC domain containing protein, expressed
LOC_Os04g02110Os.6093.3.S1_at11/114+671654..678229NB-ARC domain containing protein, expressed
LOC_Os04g02110Os.6093.2.S1_at11/114+671654..678229NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25834.1.S1_at--714--7591Chr04:648070..648094 (25 bp)
GGCGAAAAAACATCCCCGAGGGCTG
LOC_Os04g02060
OsAffx.25834.1.S1_at--597--5751Chr04:648109..648133 (25 bp)
GACGGGCAATTCGTAACTGTCCGGG
LOC_Os04g02060
OsAffx.25834.1.S1_at--754--7611Chr04:648165..648189 (25 bp)
GGGACATCCTCGTCGGGTTATGGTA
LOC_Os04g02060
OsAffx.25834.1.S1_at--858--1831Chr04:648468..648492 (25 bp)
ACGCAAAAGTCGTTGGATACTTGGA
LOC_Os04g02060
OsAffx.25834.1.S1_at--212--7932Chr04:648490..648514 (25 bp)
GGATTGAACATGCTGCAGCTTCCAG
LOC_Os04g02060
OsAffx.25834.1.S1_at--465--5971Chr04:648527..648551 (25 bp)
GAGAACATGCTGTAGCTGAGGCGTT
LOC_Os04g02060
OsAffx.25834.1.S1_at--652--4911Chr04:648567..648591 (25 bp)
GCTTCGTGGCGAGGATGGCAACATC
LOC_Os04g02060
OsAffx.25834.1.S1_at--242--2091Chr04:648587..648611 (25 bp)
ACATCAAGCTGGACGCCTGGCCTTG
LOC_Os04g02060
OsAffx.25834.1.S1_at--765--3911Chr04:648603..648627 (25 bp)
CTGGCCTTGCTTGGCGCTGAAGTGT
LOC_Os04g02060
OsAffx.25834.1.S1_at--200--5711Chr04:648741..648765 (25 bp)
GACTAGGAGAGCAACTGGATTTCAC
LOC_Os04g02060
OsAffx.25834.1.S1_at--548--10331Chr04:648760..648911 (25 bp)
TTTCACCAAAACAATTGTGTCCTCA
LOC_Os04g02060
Target Sequence 
GGCGAAAAAACATCCCCGAGGGCTGGGACAGGGCCAAGGGACGGGCAATTCGTAACTGTCCGGGGACAGGGACGAGGACG
GGGTACCATGATCCGGGGACATCCTCGTCGGGTTATGGTACCCCGTTCCGGGGAGACAGACGAAATCAATCAACGCAAAA
GTCGTTGGATACTTGGATTGAACATGCTGCAGCTTCCAGAAAAACAAAGAAGAGAACATGCTGTAGCTGAGGCGTTCGGG
CTTGGGGAGGTGCTTCGTGGCGAGGATGGCAACATCAAGCTGGACGCCTGGCCTTGCTTGGCGCTGAAGTGTGGCTGGGT
TGGCGAGGTGGCGCTGAAGGACTTGGGGCGTGGATGCGGCGGCGTGGCAGGGAGGCCGAGGCACCGAGCTCGCGTCGGCT
GGCCTGTGGCGGCTGCTTGTGGGGAGACTAGGAGAGCAACTGGATTTCACCAAAACAATTGTGTCCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25834.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis