Browse Element(s) Details


OsAffx.25903.4.S1_at

Description tigr:9632.m00637
TID=OsAffx.25903.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0725011/11hypothetical protein
LOC_Os04g0701010/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g07200OsAffx.25904.1.S1_at11/114+3811029..3813437D-mannose binding lectin family protein
LOC_Os04g07210OsAffx.13706.1.S1_at11/114+3814553..3815179hypothetical protein
LOC_Os04g07220OsAffx.25905.1.S1_at10/114+3815595..3816837hypothetical protein
LOC_Os04g07230NANA4+3823207..3824428retrotransposon protein, putative, unclassified
LOC_Os04g07240OsAffx.3761.1.S1_x_at2/114+3828415..3831227hypothetical protein
LOC_Os04g07250OsAffx.25903.4.S1_at11/114+3834749..3836797hypothetical protein
LOC_Os04g07250OsAffx.25903.5.S1_s_at11/114+3834749..3836797hypothetical protein
LOC_Os04g07260OsAffx.13703.1.S1_x_at11/114+3840464..3845035hypothetical protein
LOC_Os04g07260Os.15125.1.S1_x_at10/114+3840464..3845035hypothetical protein
LOC_Os04g07260Os.15125.1.S1_at8/114+3840464..3845035hypothetical protein
LOC_Os04g07260Os.26930.1.S2_x_at1/114+3840464..3845035hypothetical protein
LOC_Os04g07269OsAffx.1198.1.S1_at1/114+3848303..3849160NA
LOC_Os04g07280Os.47568.1.A1_s_at11/114+3853075..3856415expressed protein
LOC_Os04g07280OsAffx.25907.1.S1_at11/114+3853075..3856415expressed protein
LOC_Os04g07280OsAffx.25907.1.S1_x_at11/114+3853075..3856415expressed protein
LOC_Os04g07280OsAffx.25907.2.S1_x_at2/114+3853075..3856415expressed protein
LOC_Os04g07280OsAffx.30400.1.S1_x_at2/114+3853075..3856415expressed protein
LOC_Os04g07280OsAffx.25907.2.S1_at1/114+3853075..3856415expressed protein
LOC_Os04g07290OsAffx.21897.5.S1_x_at4/114+3858503..3861427retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g07300NANA4+3861743..3867852retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25903.4.S1_at--782--1332Chr04:3836205..3836229 (25 bp)
AGAGGTTTCATGGTGTTGACTTCCA
LOC_Os04g07250
OsAffx.25903.4.S1_at--395--4371Chr04:3836256..3836280 (25 bp)
CCACAGACTTATTCCTCGCTAAAAT
LOC_Os04g07250
OsAffx.25903.4.S1_at--243--8232Chr04:3836305..3836329 (25 bp)
GGCAATCAGGGCGATGTCCAACTAT
LOC_Os04g07250
OsAffx.25903.4.S1_at--660--712Chr04:3836330..3836354 (25 bp)
ATGATGTTCCTCTTTGTGGATCGCC
LOC_Os04g07250
OsAffx.25903.4.S1_at--406--7512Chr04:3836345..3836369 (25 bp)
GTGGATCGCCCAGAAATGCTACCGG
LOC_Os04g07250
OsAffx.25903.4.S1_at--224--7632Chr04:3836368..3836392 (25 bp)
GGGACTCCCACATAAATGGCTGTAC
LOC_Os04g07250
OsAffx.25903.4.S1_at--1046--6372Chr04:3836472..3836496 (25 bp)
GATCCCTTAGGCTCAAACAGACAGA
LOC_Os04g07250
OsAffx.25903.4.S1_at--1076--2812Chr04:3836553..3836577 (25 bp)
AAGTTCCTCGTCTCAGGTATGCAAG
LOC_Os04g07250
OsAffx.25903.4.S1_at--948--1472Chr04:3836576..3836600 (25 bp)
AGAATTGTTGCTGACACACTGTACA
LOC_Os04g07250
OsAffx.25903.4.S1_at--774--10592Chr04:3836652..3836676 (25 bp)
TTCTGATGTATGCAGCCAACCGCTG
LOC_Os04g07250
OsAffx.25903.4.S1_at--159--2592Chr04:3836705..3836729 (25 bp)
AACGCTGGCGGTGAGTTTTTGACCA
LOC_Os04g07250
Target Sequence 
AGAGGTTTCATGGTGTTGACTTCCATGAGAGCATCCTTATTTGGCACATCGCCACAGACTTATTCCTCGCTAAAATAGGG
AAGGAAGGGCCAACTGTAGAGGCAATCAGGGCGATGTCCAACTATATGATGTTCCTCTTTGTGGATCGCCCAGAAATGCT
ACCGGGACTCCCACATAAATGGCTGTACGAGATGACAAAAAAAAACATAATCGAATCATGCAGAGCATCTAATGGTTTCA
CTAATGAAGTGAAGCATGGTGGGCAAAGATCCCTTAGGCTCAAACAGACAGAGCAGGTAGCTGGCAAACTACTCAATATT
GACAAAAGGGAAGTACAACCTGGCCCTAAAGTTCCTCGTCTCAGGTATGCAAGAATTGTTGCTGACACACTGTACAAATG
GAAGGATGAAGATCCAATTGATGTGTTGTTTGACCTGTGGATAGATTTTCTGATGTATGCAGCCAACCGCTGCAATAGGG
AATCACATGCCAAGAAGCTCAACGCTGGCGGTGAGTTTTTGACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25903.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis