Browse Element(s) Details


OsAffx.25919.1.S1_at

Description tigr:9632.m00714
TID=OsAffx.25919.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0801011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g07980Os.45976.1.S1_x_at5/114+4232001..4235694transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g07980Os.45976.1.S1_at2/114+4232001..4235694transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g07990Os.46306.1.S1_x_at4/114+4237922..4241014transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g08000OsAffx.25904.1.S1_at5/114+4247105..4256492retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g08000OsAffx.21754.1.S1_x_at2/114+4247105..4256492retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g08000OsAffx.9949.1.S1_at1/114+4247105..4256492retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g08010OsAffx.25919.1.S1_at11/114+4257843..4258160hypothetical protein
LOC_Os04g08034Os.20108.3.S1_at10/114+4262031..4277841Polycomb protein EMBRYONIC FLOWER 2, putative, expressed
LOC_Os04g08034Os.6984.1.S1_at10/114+4262031..4277841Polycomb protein EMBRYONIC FLOWER 2, putative, expressed
LOC_Os04g08034Os.20108.1.S1_a_at9/114+4262031..4277841Polycomb protein EMBRYONIC FLOWER 2, putative, expressed
LOC_Os04g08034OsAffx.18365.1.S1_at1/114+4262031..4277841Polycomb protein EMBRYONIC FLOWER 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25919.1.S1_at--872--9011Chr04:4257880..4257904 (25 bp)
TGCAATCAGTGGTTGCCAATGCTAA
LOC_Os04g08010
OsAffx.25919.1.S1_at--530--3191Chr04:4257882..4257906 (25 bp)
CAATCAGTGGTTGCCAATGCTAACG
LOC_Os04g08010
OsAffx.25919.1.S1_at--10--9311Chr04:4257939..4257963 (25 bp)
TCCCCTGATCGGTGGAGCATTCGAG
LOC_Os04g08010
OsAffx.25919.1.S1_at--467--4271Chr04:4257942..4257966 (25 bp)
CCTGATCGGTGGAGCATTCGAGCTA
LOC_Os04g08010
OsAffx.25919.1.S1_at--993--491Chr04:4257946..4257970 (25 bp)
ATCGGTGGAGCATTCGAGCTAGTCA
LOC_Os04g08010
OsAffx.25919.1.S1_at--271--7511Chr04:4257950..4257974 (25 bp)
GTGGAGCATTCGAGCTAGTCAGGAT
LOC_Os04g08010
OsAffx.25919.1.S1_at--365--5931Chr04:4257953..4257977 (25 bp)
GAGCATTCGAGCTAGTCAGGATGGA
LOC_Os04g08010
OsAffx.25919.1.S1_at--169--5631Chr04:4257993..4258017 (25 bp)
GACAAAATGCAGCTACCATCACAGA
LOC_Os04g08010
OsAffx.25919.1.S1_at--43--2271Chr04:4257997..4258021 (25 bp)
AAATGCAGCTACCATCACAGAAAAC
LOC_Os04g08010
OsAffx.25919.1.S1_at--228--9391Chr04:4258027..4258051 (25 bp)
TAGGAACAAAGGGTCCAGAAGCCGA
LOC_Os04g08010
OsAffx.25919.1.S1_at--1124--5491Chr04:4258030..4258054 (25 bp)
GAACAAAGGGTCCAGAAGCCGAGGC
LOC_Os04g08010
Target Sequence 
TGCAATCAGTGGTTGCCAATGCTAACGCCAAGCCACTGGCCTTCAACTGGTTCCTCCCCTCCCCTGATCGGTGGAGCATT
CGAGCTAGTCAGGATGGAGTAGCCATGGATGGAGACAAAATGCAGCTACCATCACAGAAAACAGAAATAGGAACAAAGGG
TCCAGAAGCCGAGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25919.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis