Browse Element(s) Details


OsAffx.25934.1.S1_at

Description tigr:9632.m00790
TID=OsAffx.25934.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0873011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g08670OsAffx.22927.1.S1_x_at2/114+4695391..4698420retrotransposon protein, putative, unclassified
LOC_Os04g08670OsAffx.20380.1.S1_at1/114+4695391..4698420retrotransposon protein, putative, unclassified
LOC_Os04g08680NANA4+4699356..4701392retrotransposon protein, putative, unclassified
LOC_Os04g08690OsAffx.13730.1.S1_at11/114+4706976..4707464hypothetical protein
LOC_Os04g08700OsAffx.3751.1.S1_at11/114+4709985..4710823hypothetical protein
LOC_Os04g08710OsAffx.31287.1.S1_at1/114+4712869..4715343transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g08720OsAffx.22421.4.S1_x_at2/114+4717065..4717874transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g08730OsAffx.25934.1.S1_at11/114+4719296..4719547hypothetical protein
LOC_Os04g08740Os.14934.2.S1_at11/114+4725354..4729281GAF domain containing protein, expressed
LOC_Os04g08740Os.14934.1.S1_at11/114+4725354..4729281GAF domain containing protein, expressed
LOC_Os04g08750OsAffx.30618.1.S1_at6/114+4735894..4736709hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25934.1.S1_at--1074--3711Chr04:4719434..4719458 (25 bp)
CTACTACTCCACTGCGGCCATTAGG
LOC_Os04g08730
OsAffx.25934.1.S1_at--226--1991Chr04:4719424..4719448 (25 bp)
ACTGCGGCCATTAGGCTGCTCGGTG
LOC_Os04g08730
OsAffx.25934.1.S1_at--633--3911Chr04:4719420..4719444 (25 bp)
CGGCCATTAGGCTGCTCGGTGGTGC
LOC_Os04g08730
OsAffx.25934.1.S1_at--246--5791Chr04:4719373..4719397 (25 bp)
GACGACGACCTATGGAGCTTCATGC
LOC_Os04g08730
OsAffx.25934.1.S1_at--1117--1851Chr04:4719372..4719396 (25 bp)
ACGACGACCTATGGAGCTTCATGCA
LOC_Os04g08730
OsAffx.25934.1.S1_at--107--5791Chr04:4719370..4719394 (25 bp)
GACGACCTATGGAGCTTCATGCAGT
LOC_Os04g08730
OsAffx.25934.1.S1_at--1161--1731Chr04:4719366..4719390 (25 bp)
ACCTATGGAGCTTCATGCAGTCGGC
LOC_Os04g08730
OsAffx.25934.1.S1_at--967--3691Chr04:4719364..4719388 (25 bp)
CTATGGAGCTTCATGCAGTCGGCAC
LOC_Os04g08730
OsAffx.25934.1.S1_at--1061--831Chr04:4719362..4719386 (25 bp)
ATGGAGCTTCATGCAGTCGGCACCA
LOC_Os04g08730
OsAffx.25934.1.S1_at--1110--8531Chr04:4719361..4719385 (25 bp)
TGGAGCTTCATGCAGTCGGCACCAC
LOC_Os04g08730
OsAffx.25934.1.S1_at--737--1531Chr04:4719358..4719382 (25 bp)
AGCTTCATGCAGTCGGCACCACCGG
LOC_Os04g08730
Target Sequence 
CTACTACTCCACTGCGGCCATTAGGCTGCTCGGTGGTGCCAACGGCGGCGTCATCGGCAGCGACGACGACCTATGGAGCT
TCATGCAGTCGGCACCACCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25934.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis