Browse Element(s) Details


OsAffx.25941.1.S1_at

Description tigr:9632.m00821
TID=OsAffx.25941.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protease inhibitorseed storageLTP family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0952011/11Protease inhibitor/seed storage/LTP family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g09470OsAffx.22699.1.S1_x_at1/114+5050590..5056287retrotransposon protein, putative, unclassified
LOC_Os04g09480Os.27691.1.S1_x_at3/114+5059343..5063896retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g09490Os.27691.1.S1_x_at1/114+5064152..5065304retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g09490Os.27691.2.S1_x_at1/114+5064152..5065304retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g09500OsAffx.13733.1.S1_at11/114+5068557..5069099hypothetical protein
LOC_Os04g09510OsAffx.25940.1.S1_at11/114+5070425..5072204hypothetical protein
LOC_Os04g09510OsAffx.22250.2.S1_x_at1/114+5070425..5072204hypothetical protein
LOC_Os04g09510OsAffx.20947.1.S1_x_at1/114+5070425..5072204hypothetical protein
LOC_Os04g09510OsAffx.9652.1.S1_x_at1/114+5070425..5072204hypothetical protein
LOC_Os04g09510OsAffx.18381.1.S1_at1/114+5070425..5072204hypothetical protein
LOC_Os04g09520OsAffx.25941.1.S1_at11/114+5075638..5078657Protease inhibitor/seed storage/LTP family protein
LOC_Os04g09520Os.34818.1.S1_at1/114+5075638..5078657Protease inhibitor/seed storage/LTP family protein
LOC_Os04g09530Os.24765.1.A1_at3/114+5092099..5093612pentatricopeptide, putative, expressed
LOC_Os04g09540OsAffx.3755.1.S1_at11/114+5101123..5105179Phospholipase/Carboxylesterase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25941.1.S1_at--779--9191Chr04:5078020..5078044 (25 bp)
TGCCATCAATTCCTATCACTCTTGG
LOC_Os04g09520
OsAffx.25941.1.S1_at--166--391Chr04:5078006..5078030 (25 bp)
ATCACTCTTGGATCACCAGGAGCAC
LOC_Os04g09520
OsAffx.25941.1.S1_at--656--3471Chr04:5077990..5078014 (25 bp)
CAGGAGCACAAATCCCCATAAACTC
LOC_Os04g09520
OsAffx.25941.1.S1_at--404--3371Chr04:5077964..5077988 (25 bp)
CAGAGCGCACTGTCAACGTCTACCA
LOC_Os04g09520
OsAffx.25941.1.S1_at--630--3371Chr04:5077939..5077963 (25 bp)
CACCACAGGTGATCACAGAGTGCCT
LOC_Os04g09520
OsAffx.25941.1.S1_at--1034--1331Chr04:5077923..5077947 (25 bp)
AGAGTGCCTGTCGTCGCTGATGCAG
LOC_Os04g09520
OsAffx.25941.1.S1_at--566--591Chr04:5077895..5077919 (25 bp)
ATGCCATGCATGGAGTATCTGACCA
LOC_Os04g09520
OsAffx.25941.1.S1_at--917--1191Chr04:5077882..5077906 (25 bp)
AGTATCTGACCAAGGCTGACGAGCC
LOC_Os04g09520
OsAffx.25941.1.S1_at--1069--4551Chr04:5077754..5077778 (25 bp)
GCGCCGATCGATTTCGCACGTATGA
LOC_Os04g09520
OsAffx.25941.1.S1_at--856--191Chr04:5077744..5077768 (25 bp)
ATTTCGCACGTATGATGTCTCTTCC
LOC_Os04g09520
OsAffx.25941.1.S1_at--867--2311Chr04:5075737..5075759 (23 bp)
AAAGGTGGTAGCACATGGTGTCTTA
LOC_Os04g09520
Target Sequence 
TGCCATCAATTCCTATCACTCTTGGATCACCAGGAGCACAAATCCCCATAAACTCCCAGAGCGCACTGTCAACGTCTACC
ACACCACAGGTGATCACAGAGTGCCTGTCGTCGCTGATGCAGCTGATGCCATGCATGGAGTATCTGACCAAGGCTGACGA
GCCGGCTCCCCCGAGTATCGGCTGCGACAGCTTCAAGTCGCTTGTGGAGAAGGCGCCCATCTGCCTCTGCCATGGCATCA
ACGGCGACATCAGCAAGTTCATGCCGGCGCCGATCGATTTCGCACGTATGATGTCTCTTCCGGCCACCTGCGGCGTCGCC
CCGCCTGTCGAGGCTCTGACCAAGTGCTTCACGGGACCAGTGCCGCCGTTGATGCCTGCTCCTACTCCCGCTGCTGCTCC
ATCTCCGGGGCCATCTGCTTCTTTGCAAGATATCCGAATGGCAAAGGTGGTAGCACATGGTGTCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25941.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis