Browse Element(s) Details


OsAffx.25987.1.S1_at

Description tigr:9632.m01055
TID=OsAffx.25987.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Transferase family
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1181011/11Transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g11770OsAffx.19542.3.S1_x_at8/114+6423431..6427653retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g11780OsAffx.3768.1.S1_at11/114+6428565..6432301resistance protein LR10, putative
LOC_Os04g11790Os.54230.1.S1_at11/114+6434709..6436053F-box domain containing protein, expressed
LOC_Os04g11800OsAffx.25986.1.S1_at11/114+6445205..6446591hypothetical protein
LOC_Os04g11810OsAffx.25987.1.S1_at11/114+6451810..6453135Transferase family protein, expressed
LOC_Os04g11820Os.50428.1.S1_at11/114+6455359..6461783ABC-2 type transporter family protein, expressed
LOC_Os04g11830Os.53807.1.S2_at11/114+6470913..6475626PCF2 DNA binding protein, putative, expressed
LOC_Os04g11830Os.53807.1.S1_at11/114+6470913..6475626PCF2 DNA binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25987.1.S1_at--446--1831Chr04:6452620..6452644 (25 bp)
ACGCGCGCGGTCTTGATCTCCGGCG
LOC_Os04g11810
OsAffx.25987.1.S1_at--1062--3951Chr04:6452627..6452651 (25 bp)
CGGTCTTGATCTCCGGCGACTCCGA
LOC_Os04g11810
OsAffx.25987.1.S1_at--472--3211Chr04:6452817..6452841 (25 bp)
CAAGGAGCTGATCCCGGCTCAGTTC
LOC_Os04g11810
OsAffx.25987.1.S1_at--275--1611Chr04:6452822..6452846 (25 bp)
AGCTGATCCCGGCTCAGTTCGAGAA
LOC_Os04g11810
OsAffx.25987.1.S1_at--887--6371Chr04:6452826..6452850 (25 bp)
GATCCCGGCTCAGTTCGAGAACGGC
LOC_Os04g11810
OsAffx.25987.1.S1_at--429--3931Chr04:6452873..6452897 (25 bp)
CGGCGCGCGTGGAGAGGCAGCTGAT
LOC_Os04g11810
OsAffx.25987.1.S1_at--184--3871Chr04:6452893..6452917 (25 bp)
CTGATGAGCGCGCTGTTCGGGTACA
LOC_Os04g11810
OsAffx.25987.1.S1_at--696--7711Chr04:6452990..6453014 (25 bp)
GGGTGATGTGCCATGTCGGGCCGAC
LOC_Os04g11810
OsAffx.25987.1.S1_at--861--4411Chr04:6453061..6453085 (25 bp)
GCCAGCGTTCTGCTGCTGTGCGTAA
LOC_Os04g11810
OsAffx.25987.1.S1_at--111--4631Chr04:6453065..6453089 (25 bp)
GCGTTCTGCTGCTGTGCGTAAAGGA
LOC_Os04g11810
OsAffx.25987.1.S1_at--819--10591Chr04:6453068..6453092 (25 bp)
TTCTGCTGCTGTGCGTAAAGGAGGA
LOC_Os04g11810
Target Sequence 
ACGCGCGCGGTCTTGATCTCCGGCGACTCCGACGCCGACACGCCCGCGCCGCTCGTCTTCGCGGCCAACGTGCACAAGCA
CGTCGGCGCCAAGCACGGCTACTACGGCAACTGCGTCACCTCCCAGGTGGTCGCCGCGACGAGCGGCGAGGTGGCGAACG
GCGACGCCAACGACGTGGTGAAGCTGATCCGGCGAGCCAAGGAGCTGATCCCGGCTCAGTTCGAGAACGGCGGTGTCGCC
ATGAACGGGGCGGCGGCGCGCGTGGAGAGGCAGCTGATGAGCGCGCTGTTCGGGTACAACGCATTCTACGTGGCGAGCTG
GCGGAACATCGGGTTCGAGGCGGTGGACTTCGGCGGCGGGAGGCCGGCGCGGGTGATGTGCCATGTCGGGCCGACGGCGG
TGCCGAGCTGCGTGGCGTGCCTGCCTCGCGACAGCGGCGGCGCCAGCGTTCTGCTGCTGTGCGTAAAGGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25987.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis