Browse Element(s) Details


OsAffx.25995.1.S1_at

Description tigr:9632.m01089
TID=OsAffx.25995.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1214011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g12110OsAffx.25993.1.S1_at11/114+6639791..6641675hypothetical protein
LOC_Os04g12120NANA4+6644741..6648577transposon protein, putative, unclassified
LOC_Os04g12130Os.46785.2.S1_x_at2/114+6657898..6661798retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g12130OsAffx.442.1.S1_x_at1/114+6657898..6661798retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g12130OsAffx.30226.2.S1_x_at1/114+6657898..6661798retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g12140OsAffx.25995.1.S1_at11/114+6663496..6673025expressed protein
LOC_Os04g12150OsAffx.13784.1.S1_at11/114+6675583..6676660hypothetical protein
LOC_Os04g12160OsAffx.25996.1.S1_at11/114+6683892..6684443Aspartic proteinase nepenthesin-2 precursor, putative
LOC_Os04g12170NANA4+6686132..6688798transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g12180OsAffx.3774.1.S1_at11/114+6689236..6692022Protein kinase domain containing protein
LOC_Os04g12180OsAffx.20742.3.S1_x_at1/114+6689236..6692022Protein kinase domain containing protein
LOC_Os04g12190OsAffx.15781.5.S1_x_at11/114+6694449..6696402transposase, putative
LOC_Os04g12190OsAffx.15781.4.S1_x_at8/114+6694449..6696402transposase, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25995.1.S1_at--360--2791Chr04:6672477..6672501 (25 bp)
AAGAGTTGTTCCAACCATGCTCGAG
LOC_Os04g12140
OsAffx.25995.1.S1_at--697--5351Chr04:6672536..6672560 (25 bp)
GAAGATGAACATTCGCCTCGGGAAG
LOC_Os04g12140
OsAffx.25995.1.S1_at--959--10091Chr04:6672581..6672605 (25 bp)
TAGGCAGATCATTGTTCCCGTGTAC
LOC_Os04g12140
OsAffx.25995.1.S1_at--317--331Chr04:6672607..6672631 (25 bp)
ATAAAAACCTTATGGCACGCAGTGC
LOC_Os04g12140
OsAffx.25995.1.S1_at--97--8951Chr04:6672637..6672661 (25 bp)
TGACGTGCCTCACTGATTCTGAAAG
LOC_Os04g12140
OsAffx.25995.1.S1_at--763--5131Chr04:6672669..6672693 (25 bp)
GCAAATGGCAATGCTCTCTACGCAT
LOC_Os04g12140
OsAffx.25995.1.S1_at--653--2291Chr04:6672793..6672817 (25 bp)
AAATGGTGGTACTTCTCGTGAGGGA
LOC_Os04g12140
OsAffx.25995.1.S1_at--887--5571Chr04:6672816..6672840 (25 bp)
GAAATGTTCCTCGAAGTTTCCAAAT
LOC_Os04g12140
OsAffx.25995.1.S1_at--204--2831Chr04:6672847..6672871 (25 bp)
AAGTTGCTGGTGAGGCTCGCCTGTC
LOC_Os04g12140
OsAffx.25995.1.S1_at--211--1251Chr04:6672920..6672944 (25 bp)
AGATACTGATTACCCTGATTACTAC
LOC_Os04g12140
OsAffx.25995.1.S1_at--439--10171Chr04:6672967..6672991 (25 bp)
TATCATACATGCTTTCCTGGCTATC
LOC_Os04g12140
Target Sequence 
AAGAGTTGTTCCAACCATGCTCGAGCTCACGGCCAGGTCCGTTTGGCAATGGAGATGGAGAAGATGAACATTCGCCTCGG
GAAGGAAATGGTGACGATGATATGTAGGCAGATCATTGTTCCCGTGTACTATAAAAACCTTATGGCACGCAGTGCTATGC
TGACGTGCCTCACTGATTCTGAAAGCCAAAGAGCAAATGGCAATGCTCTCTACGCATTGACGATTGAGAAAATGGAGATC
ACTCTCGTGATGGAGATGGACAAGGTGGAGGCCAATCCAGAGCGTATGGATAAAATTGTTAGTAATTACAATGAAAAAAT
GGTGGTACTTCTCGTGAGGGAAATGTTCCTCGAAGTTTCCAAATATGCACAAGTTGCTGGTGAGGCTCGCCTGTCGAGGG
AGATGGAGGATATGGAAGATAGTCTGGTATACAAGGCGACAACAGATACTGATTACCCTGATTACTACAAAAAACTTGTA
TCTAACAAGCTATCATACATGCTTTCCTGGCTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25995.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis