Browse Element(s) Details


OsAffx.26037.1.S1_at

Description tigr:9632.m01378
TID=OsAffx.26037.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1500011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g14940NANA4+8378674..8381965retrotransposon protein, putative, unclassified
LOC_Os04g14950NANA4+8382594..8385542retrotransposon protein, putative, unclassified
LOC_Os04g14960NANA4+8386721..8388804retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g14970OsAffx.10633.1.S1_at8/114+8389082..8391534retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g14980Os.40360.1.S1_at9/114+8395845..8400042hypothetical protein
LOC_Os04g14980Os.40360.1.S1_x_at7/114+8395845..8400042hypothetical protein
LOC_Os04g14980Os.40855.5.S1_x_at1/114+8395845..8400042hypothetical protein
LOC_Os04g14990OsAffx.3796.1.S1_at11/114+8402335..8404471BURP domain containing protein
LOC_Os04g15000OsAffx.26037.1.S1_at11/114+8406155..8407245hypothetical protein
LOC_Os04g15510OsAffx.26038.1.S1_at11/114+8413130..8415433hypothetical protein
LOC_Os04g15520Os.10731.1.A1_a_at11/114+8420054..8421698retrotransposon protein, putative, unclassified
LOC_Os04g15520Os.38764.1.S1_x_at6/114+8420054..8421698retrotransposon protein, putative, unclassified
LOC_Os04g15520OsAffx.11280.1.S1_at4/114+8420054..8421698retrotransposon protein, putative, unclassified
LOC_Os04g15520Os.48015.1.A1_x_at3/114+8420054..8421698retrotransposon protein, putative, unclassified
LOC_Os04g15530OsAffx.13822.1.S1_at11/114+8425046..8428682retrotransposon protein, putative, Ty1-copia subclass, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26037.1.S1_at--702--8571Chr04:8406680..8407150 (25 bp)
TGGTTGTCGACAGCAGAGGATCTCA
LOC_Os04g15000
OsAffx.26037.1.S1_at--439--1531Chr04:8406572..8406596 (25 bp)
AGCAGTCCACTTGCCGTTTGGCCGG
LOC_Os04g15000
OsAffx.26037.1.S1_at--1147--7191Chr04:8406517..8406541 (25 bp)
GTCGTCGCCGCATCTAAACTCCGAG
LOC_Os04g15000
OsAffx.26037.1.S1_at--1043--9491Chr04:8406456..8406480 (25 bp)
TCTCCGAGGGCAGCGCTGAATGCAA
LOC_Os04g15000
OsAffx.26037.1.S1_at--555--4791Chr04:8406413..8406437 (25 bp)
GCTCGCTGCCGTTGAACGCCAAGCA
LOC_Os04g15000
OsAffx.26037.1.S1_at--330--7211Chr04:8406343..8406367 (25 bp)
GTCGTCTTCCATGGTGATGCCGCTA
LOC_Os04g15000
OsAffx.26037.1.S1_at--585--8611Chr04:8406332..8406356 (25 bp)
TGGTGATGCCGCTAGAGCCGAAGAC
LOC_Os04g15000
OsAffx.26037.1.S1_at--1016--5851Chr04:8406276..8406300 (25 bp)
GAGCCGTGGAGGTGAACCACTTCAA
LOC_Os04g15000
OsAffx.26037.1.S1_at--808--8291Chr04:8406244..8406268 (25 bp)
GGCTTGCCAACCAAAGCTTTTCTTG
LOC_Os04g15000
OsAffx.26037.1.S1_at--801--3731Chr04:8406204..8406228 (25 bp)
CTAAGCTTGTTCTTGCACTACTTGA
LOC_Os04g15000
OsAffx.26037.1.S1_at--75--2071Chr04:8406185..8406209 (25 bp)
ACTTGAGAAACTATCTTGGCCGGGT
LOC_Os04g15000
Target Sequence 
TGGTTGTCGACAGCAGAGGATCTCAATCCCTCTCCCTCTCCCAGCTATTGCCGCTTGCCTGCTCGCGCTACGAACGTCGA
GCCCTCCCCACGCCAACCCTCTCCCGCCAGCAGTCCACTTGCCGTTTGGCCGGCACCGCGGCACCGCCATCCACGACCTC
TCAGTCGTCGCCGCATCTAAACTCCGAGCGCCGCCATCGGCGTCGATGCCTCCCACTTCTTCCCTCTCCGAGGGCAGCGC
TGAATGCAAAGGCCGCCACCTTCGTGCGCTCGCTGCCGTTGAACGCCAAGCACTGCACCACAATCCTTCCACGCAGCTCA
ATGGCTCCTCCTCCTCCGTCGTCTTCCATGGTGATGCCGCTAGAGCCGAAGACGGGAGCCCCGGTGCTGGTGGTCGTTGG
GGTGGAGCCGTGGAGGTGAACCACTTCAAAAATTTTGGCTTGCCAACCAAAGCTTTTCTTGTAGACATTATTATTACTAA
GCTTGTTCTTGCACTACTTGAGAAACTATCTTGGCCGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26037.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis