Browse Element(s) Details


OsAffx.3796.1.S1_at

Description tigr:9632.m01377
TID=OsAffx.3796.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BURP domain-containing protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1499011/11BURP domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g14930NANA4+8375602..8377605retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g14940NANA4+8378674..8381965retrotransposon protein, putative, unclassified
LOC_Os04g14950NANA4+8382594..8385542retrotransposon protein, putative, unclassified
LOC_Os04g14960NANA4+8386721..8388804retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g14970OsAffx.10633.1.S1_at8/114+8389082..8391534retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g14980Os.40360.1.S1_at9/114+8395845..8400042hypothetical protein
LOC_Os04g14980Os.40360.1.S1_x_at7/114+8395845..8400042hypothetical protein
LOC_Os04g14980Os.40855.5.S1_x_at1/114+8395845..8400042hypothetical protein
LOC_Os04g14990OsAffx.3796.1.S1_at11/114+8402335..8404471BURP domain containing protein
LOC_Os04g15000OsAffx.26037.1.S1_at11/114+8406155..8407245hypothetical protein
LOC_Os04g15510OsAffx.26038.1.S1_at11/114+8413130..8415433hypothetical protein
LOC_Os04g15520Os.10731.1.A1_a_at11/114+8420054..8421698retrotransposon protein, putative, unclassified
LOC_Os04g15520Os.38764.1.S1_x_at6/114+8420054..8421698retrotransposon protein, putative, unclassified
LOC_Os04g15520OsAffx.11280.1.S1_at4/114+8420054..8421698retrotransposon protein, putative, unclassified
LOC_Os04g15520Os.48015.1.A1_x_at3/114+8420054..8421698retrotransposon protein, putative, unclassified
LOC_Os04g15530OsAffx.13822.1.S1_at11/114+8425046..8428682retrotransposon protein, putative, Ty1-copia subclass, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009651biological_processresponse to salt stress
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0004650molecular_functionpolygalacturonase activity
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3796.1.S1_at--791--6231Chr04:8403880..8403904 (25 bp)
GATGGCTGGCACCAAGTTTCTGCCC
LOC_Os04g14990
OsAffx.3796.1.S1_at--285--5511Chr04:8404006..8404030 (25 bp)
GAACACACTGCTGGAGTGCGAGCTA
LOC_Os04g14990
OsAffx.3796.1.S1_at--663--8031Chr04:8404018..8404042 (25 bp)
GGAGTGCGAGCTACCGGCGAACAAA
LOC_Os04g14990
OsAffx.3796.1.S1_at--557--1451Chr04:8404047..8404071 (25 bp)
AGAAGAAGGCTTGCGCCACATCACT
LOC_Os04g14990
OsAffx.3796.1.S1_at--1031--4551Chr04:8404059..8404083 (25 bp)
GCGCCACATCACTGGAGTCGATGGT
LOC_Os04g14990
OsAffx.3796.1.S1_at--807--6251Chr04:8404078..8404102 (25 bp)
GATGGTCGACTTCGTAGCATCCAGC
LOC_Os04g14990
OsAffx.3796.1.S1_at--139--4831Chr04:8404166..8404190 (25 bp)
GCTCAGGAGTACACGGTCACCGGCG
LOC_Os04g14990
OsAffx.3796.1.S1_at--780--8391Chr04:8404194..8404218 (25 bp)
GGCGCATGGCTGAAACTGGGCAACT
LOC_Os04g14990
OsAffx.3796.1.S1_at--436--8971Chr04:8404204..8404228 (25 bp)
TGAAACTGGGCAACTCATCGCTTGC
LOC_Os04g14990
OsAffx.3796.1.S1_at--745--4051Chr04:8404234..8404258 (25 bp)
CGAGTCGTACCCATATGCTGTGTTC
LOC_Os04g14990
OsAffx.3796.1.S1_at--285--1671Chr04:8404349..8404373 (25 bp)
ACCGACACGGCAGAGTGGAACCCAA
LOC_Os04g14990
Target Sequence 
GATGGCTGGCACCAAGTTTCTGCCCCGAGGCGAGGCCGACGCCGTCCCATTCTCCTCCAAGGATCTCCAGGAGATCCTCG
CGCGATTCGGGGTGCGGCCGGGCTCCGTGGACGCGTCGGTGGTGAAGAACACACTGCTGGAGTGCGAGCTACCGGCGAAC
AAAGGCGAGAAGAAGGCTTGCGCCACATCACTGGAGTCGATGGTCGACTTCGTAGCATCCAGCCTGGGGACCAGAGACAT
CAAGGCCGCCTCCACCTTCCTGGTCGGCAAGGACGGGGACACTCCGGCTCAGGAGTACACGGTCACCGGCGCGCGGCGCA
TGGCTGAAACTGGGCAACTCATCGCTTGCCATCCCGAGTCGTACCCATATGCTGTGTTCATGTGCCACCTCACAGAGGCG
ACGAGGGCGTACAAGGCGTCGTTGGTCGGCAAAGACGGTGCGGCGGTGGAGGCGGTCGCCGTATGCCACACCGACACGGC
AGAGTGGAACCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3796.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis