Browse Element(s) Details


OsAffx.26144.1.S1_x_at

Description gb:NM_194840.1
DB_XREF= gi:37531039
TID=OsAffx.26144.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative transposon protein (OSJNBa0030B02.14), mRNA.
PROD=putative transposon protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0565011/11transposon protein, putative, Mutator sub-class
LOC_Os04g253008/11Zinc knuckle family protein
LOC_Os06g307008/11transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g261707/11Zinc knuckle family protein
LOC_Os07g033106/11transposon protein, putative, Mutator sub-class
LOC_Os07g034006/11transposon protein, putative, Mutator sub-class
LOC_Os07g034906/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05600Os.56354.1.S1_at10/1110+2778783..2780822Thaumatin family protein, expressed
LOC_Os10g05610OsAffx.6584.1.S1_at11/1110+2786076..2786484hypothetical protein
LOC_Os10g05620OsAffx.8513.1.S1_s_at11/1110+2788683..2791653transposon protein, putative, unclassified
LOC_Os10g05620OsAffx.8513.2.S1_at6/1110+2788683..2791653transposon protein, putative, unclassified
LOC_Os10g05630NANA10+2797727..2797981hypothetical protein
LOC_Os10g05650OsAffx.26144.1.S1_x_at11/1110+2800492..2803771transposon protein, putative, Mutator sub-class
LOC_Os10g05650OsAffx.26144.3.S1_s_at11/1110+2800492..2803771transposon protein, putative, Mutator sub-class
LOC_Os10g05650OsAffx.26144.3.S1_at8/1110+2800492..2803771transposon protein, putative, Mutator sub-class
LOC_Os10g05660NANA10+2813311..2814946Thaumatin-like protein 1 precursor, putative, expressed
LOC_Os10g05680Os.39943.1.S1_s_at11/1110+2827442..2829627expressed protein
LOC_Os10g05680Os.39943.2.A1_x_at11/1110+2827442..2829627expressed protein
LOC_Os10g05680Os.39943.1.S1_x_at10/1110+2827442..2829627expressed protein
LOC_Os10g05680Os.38340.1.S1_at9/1110+2827442..2829627expressed protein
LOC_Os10g05680Os.39943.2.A1_at8/1110+2827442..2829627expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26144.1.S1_x_at--837--7914Chr10:2801097..2801121 (25 bp)
GGTTGGCAGACCACCTAAGTCTAGG
LOC_Os10g05650
OsAffx.26144.1.S1_x_at--1070--5551Chr10:2800954..2800978 (25 bp)
GAAAGGCTAGACTCAGACCCAAACT
LOC_Os10g05650
OsAffx.26144.1.S1_x_at--234--1192Chr10:2800922..2800946 (25 bp)
AGTAGGATCCCAGCTGCAAGTTCTA
LOC_Os10g05650
OsAffx.26144.1.S1_x_at--123--5057Chr10:2800782..2800802 (21 bp)
GCAGAGGTGCTGACCCAATCTCAGT
LOC_Os10g05650
OsAffx.26144.1.S1_x_at--944--3177Chr10:2800767..2800791 (25 bp)
CAATCTCAGTCTGCATATGACCAAT
LOC_Os10g05650
OsAffx.26144.1.S1_x_at--748--371Chr10:2800738..2800762 (25 bp)
ATCACAAGTTCCTAATCCTGTGGTT
LOC_Os10g05650
OsAffx.26144.1.S1_x_at--452--837Chr10:2800677..2800701 (25 bp)
ATGGAAACTACACATGGTCCTCTCC
LOC_Os10g05650
OsAffx.26144.1.S1_x_at--156--817Chr10:2800664..2800688 (25 bp)
ATGGTCCTCTCCCAGATAACCAGTA
LOC_Os10g05650
OsAffx.26144.1.S1_x_at--319--9792Chr10:2800648..2800672 (25 bp)
TAACCAGTACATCCTTTCAAACCAG
LOC_Os10g05650
OsAffx.26144.1.S1_x_at--762--3377Chr10:2800622..2800646 (25 bp)
CAGCTGTAGTATCTACCCCTATGAC
LOC_Os10g05650
OsAffx.26144.1.S1_x_at--1105--8037Chr10:2800533..2800557 (25 bp)
GGAGTTGCTGCTACTACTTCAAAGA
LOC_Os10g05650
Target Sequence 
GGTTGGCAGACCACCTAAGTCTAGGAGGAAAGCACCACATGAGGTACAGGGAAAAAATGGGCCTAAAATGTCCAAGCATG
GTGTGGAGATGCACTGCTCTTTCTGCAAAGAGCCTAGACATAACAAGAAAGGGTGCCCACTGAGAAAGGCTAGACTCAGA
CCCAAACTGAAGACAAGTAGGATCCCAGCTGCAAGTTCTACAAAAGAGTGGCATGAATCTAAGCAAGAACCAGCAGAGGT
GCTGACCCAATCTCAGTCTGCATATGACCAATTACTATCACAAGTTCCTAATCCTGTGGTTACACAGATGTTTGAGGAAT
CATCACAAGTTAGTCAAATGGAAACTACACATGGTCCTCTCCCAGATAACCAGTACATCCTTTCAAACCAGCCAGCTGTA
GTATCTACCCCTATGACCACAGCAACAAAAGAGGGAAAATCTAGGGCCAACAAAAGGAAGTGTACAACTGAAGGAGTATC
AGGAGTTGCTGCTACTACTTCAAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26144.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis