Browse Element(s) Details


OsAffx.26147.4.S1_s_at

Description tigr:9635.m00027
TID=OsAffx.26147.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0127011/11transposon protein, putative, unclassified
LOC_Os01g7185011/11transposon protein, putative, unclassified
LOC_Os04g4463011/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01240Os.54098.1.S1_at10/117+132461..141877expressed protein
LOC_Os07g01240OsAffx.17848.5.S1_x_at1/117+132461..141877expressed protein
LOC_Os07g01250Os.14528.1.S1_at11/117+145440..148483tobamovirus multiplication protein 3, putative, expressed
LOC_Os07g01260Os.53833.1.S1_at11/117+153181..156900RNA-binding protein homolog, putative, expressed
LOC_Os07g01270OsAffx.26147.4.S1_s_at11/117+159138..171211transposon protein, putative, unclassified
LOC_Os07g01270OsAffx.26147.2.S1_x_at9/117+159138..171211transposon protein, putative, unclassified
LOC_Os07g01270Os.44572.1.S1_x_at8/117+159138..171211transposon protein, putative, unclassified
LOC_Os07g01280OsAffx.28220.1.S1_s_at11/117+172041..175550hypothetical protein
LOC_Os07g01290NANA7+177299..179836transposon protein, putative, Mutator sub-class
LOC_Os07g01300Os.51588.1.S1_x_at11/117+180814..181542expressed protein
LOC_Os07g01300Os.51588.1.S1_at11/117+180814..181542expressed protein
LOC_Os07g01300OsAffx.8749.1.S1_at4/117+180814..181542expressed protein
LOC_Os07g01310Os.40446.1.S1_at9/117+189343..194728Glutamate receptor 3.4 precursor, putative, expressed
LOC_Os07g01320Os.6121.1.S1_at11/117+194377..198122expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26147.4.S1_s_at--1048--6153Chr07:161218..161242 (25 bp)
GAGGACAAGAAAGCTTTACAAGTCT
LOC_Os07g01270
OsAffx.26147.4.S1_s_at--286--2693Chr07:161228..161252 (25 bp)
AAGCTTTACAAGTCTACTTCGGACA
LOC_Os07g01270
OsAffx.26147.4.S1_s_at--336--10473Chr07:161233..161257 (25 bp)
TTACAAGTCTACTTCGGACACCAGC
LOC_Os07g01270
OsAffx.26147.4.S1_s_at--446--9533Chr07:161240..161264 (25 bp)
TCTACTTCGGACACCAGCATTTGAT
LOC_Os07g01270
OsAffx.26147.4.S1_s_at--679--3953Chr07:161247..161359 (25 bp)
CGGACACCAGCATTTGATAATTCAA
LOC_Os07g01270
OsAffx.26147.4.S1_s_at--956--6453Chr07:161353..161374 (22 bp)
GATAATTCAATGATCTTAACAACCA
LOC_Os07g01270
OsAffx.26147.4.S1_s_at--634--2213Chr07:161368..161392 (25 bp)
ACAACCAGTAGATTTTCTCCAGAAC
LOC_Os07g01270
OsAffx.26147.4.S1_s_at--634--6933Chr07:161375..161399 (25 bp)
GTAGATTTTCTCCAGAACTAGAAGA
LOC_Os07g01270
OsAffx.26147.4.S1_s_at--132--5373Chr07:161395..161419 (25 bp)
GAAGAGCAGCAGGATATGACATATG
LOC_Os07g01270
OsAffx.26147.4.S1_s_at--434--5953Chr07:161419..161443 (25 bp)
GAGCAACACATATCAACTACACACT
LOC_Os07g01270
OsAffx.26147.4.S1_s_at--1070--233Chr07:161428..161452 (25 bp)
ATATCAACTACACACTGGAGCTATG
LOC_Os07g01270
Target Sequence 
GAGGACAAGAAAGCTTTACAAGTCTACTTCGGACACCAGCATTTGATAATTCAATGATCTTAACAACCAGTAGATTTTCT
CCAGAACTAGAAGAGCAGCAGGATATGACATATGAGCAACACATATCAACTACACACTGGAGCTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26147.4.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis