Browse Element(s) Details


OsAffx.26158.1.S1_x_at

Description tigr:9638.m00476
TID=OsAffx.26158.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g261608/11hypothetical protein
LOC_Os04g252905/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g26130OsAffx.425.1.S1_at1/114+15205782..15207483transposon protein, putative, Mariner sub-class
LOC_Os04g26140Os.40360.1.S1_at9/114+15214829..15223766hypothetical protein
LOC_Os04g26140Os.40855.2.S1_x_at9/114+15214829..15223766hypothetical protein
LOC_Os04g26140Os.40360.1.S1_x_at6/114+15214829..15223766hypothetical protein
LOC_Os04g26140Os.40855.4.S1_x_at3/114+15214829..15223766hypothetical protein
LOC_Os04g26140Os.40855.5.S1_x_at3/114+15214829..15223766hypothetical protein
LOC_Os04g26140Os.40855.4.S1_at1/114+15214829..15223766hypothetical protein
LOC_Os04g26150OsAffx.3900.1.S1_at11/114+15226251..15227293hypothetical protein
LOC_Os04g26160OsAffx.26158.1.S1_x_at8/114+15231811..15234257hypothetical protein
LOC_Os04g26160OsAffx.26158.2.S1_x_at3/114+15231811..15234257hypothetical protein
LOC_Os04g26160OsAffx.26158.2.S1_at1/114+15231811..15234257hypothetical protein
LOC_Os04g26170OsAffx.26144.1.S1_x_at7/114+15234587..15236391Zinc knuckle family protein
LOC_Os04g26180Os.45902.1.A1_x_at2/114+15239011..15240476hypothetical protein
LOC_Os04g26180Os.10263.1.S1_at1/114+15239011..15240476hypothetical protein
LOC_Os04g26180OsAffx.21755.1.S1_x_at1/114+15239011..15240476hypothetical protein
LOC_Os04g26180OsAffx.727.1.S1_x_at1/114+15239011..15240476hypothetical protein
LOC_Os04g26190Os.9665.1.S1_at6/114+15244356..15245046Pollen allergen family protein
LOC_Os04g26200OsAffx.26159.1.S1_at10/114+15247619..15248553hypothetical protein
LOC_Os04g26210OsAffx.22711.4.A1_x_at1/114+15255500..15256105transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26158.1.S1_x_at--1135--7232Chr04:15231845..15231869 (25 bp)
GTCCCTCCAGTGCAGAAACAAGCAG
LOC_Os04g26160
OsAffx.26158.1.S1_x_at--571--5011NONE
GCAGGAAATGCGACATGTGGTTCTT
NONE
OsAffx.26158.1.S1_x_at--457--611NONE
ATGCGACATGTGGTTCTTCGGCGGA
NONE
OsAffx.26158.1.S1_x_at--1161--4617Chr10:2799504..2799528 (25 bp)
GCGATGGCAGGCTCGAGCTCCAGTA
NONE
OsAffx.26158.1.S1_x_at--910--6537Chr10:2799717..2799741 (25 bp)
GATTTAGTCAGCACTGTTCGTGAAG
NONE
OsAffx.26158.1.S1_x_at--454--2257Chr10:2799760..2799784 (25 bp)
AAATTAGAGCATCCCTTGCCAACTC
NONE
OsAffx.26158.1.S1_x_at--594--9314Chr10:2799771..2799795 (25 bp)
TCCCTTGCCAACTCAAGAGCTGTGA
NONE
OsAffx.26158.1.S1_x_at--152--1374Chr10:2799786..2799810 (25 bp)
AGAGCTGTGATTGATGGACTTGTCA
NONE
OsAffx.26158.1.S1_x_at--1097--5176Chr10:2799817..2799841 (25 bp)
GCAATGTCTATGAAGCAAAGAGCAT
NONE
OsAffx.26158.1.S1_x_at--180--2433Chr10:2799848..2799872 (25 bp)
AAAAGAGGAATGTGGCTCATTTGCT
NONE
OsAffx.26158.1.S1_x_at--886--7113Chr10:2799923..2799947 (25 bp)
GTCAGTAATTGTTGGTTTTGTAGTA
NONE
Target Sequence 
GTCCCTCCAGTGCAGAAACAAGCAGGAAATGCGACATGTGGTTCTTCGGCGGAGTAGGTCTCGGCGGGCTTCGGCGGCAG
AGGCGATGGCAGGCTCGAGCTCCAGTANNNNCNNNNNACNGNNGNCGNNCNNANNNNNCANGCNANAATGGTGGATGCAA
ATTATGGCAGTGGTATGAACCAGGGACAACGCNNTATTTGNAGCAGGTTTTGAATGATTTAGTCAGCACTGTTCGTGAAG
TGAAGACAGAGAACTCTNAAATTAGAGCATCCCTTGCCAACTCAAGAGCTGTGATTGATGGACTTGTCACTGAANGCAAT
GTCTATGAAGCAAAGAGCATGGGACAAAAAGAGGAATGTGGCTCATTTGCTGAAATGGCNTGTAGAATCAAGATGTTAGA
AGAGAGTAGANGATTTATGTTGTCAGTAATTGTTGGTTTTGTAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26158.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis