Browse Element(s) Details


OsAffx.26198.1.S1_at

Description tigr:9632.m02658
TID=OsAffx.26198.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2817010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g28130Os.23483.1.A1_s_at11/114+16427171..16430631myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os04g28140OsAffx.26197.1.S1_at8/114+16434443..16434965hypothetical protein
LOC_Os04g28150OsAffx.3926.1.S1_at11/114+16437494..16440185hypothetical protein
LOC_Os04g28160OsAffx.3927.1.S1_at11/114+16442525..16445691Response regulator receiver domain containing protein, expressed
LOC_Os04g28170OsAffx.26198.1.S1_at10/114+16452091..16455192expressed protein
LOC_Os04g28180Os.11541.1.S1_at11/114+16458323..1646099440S ribosomal protein S8, putative, expressed
LOC_Os04g28190OsAffx.3928.1.S1_at11/114+16464032..16465327hypothetical protein
LOC_Os04g28200Os.53129.1.S1_at11/114+16474406..16477095Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28200Os.53129.1.S1_x_at11/114+16474406..16477095Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28200OsAffx.26202.1.S1_x_at6/114+16474406..16477095Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28210Os.49917.1.S1_at11/114+16479878..16483077Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26198.1.S1_at--565--391NONE
ATCACGCCGAGTAGATAGCCAGGAA
NONE
OsAffx.26198.1.S1_at--25--5371Chr04:16453619..16453643 (25 bp)
GAAGAACGTCGTACCGTGGCAAGAA
LOC_Os04g28170
OsAffx.26198.1.S1_at--508--6691Chr04:16452909..16452933 (25 bp)
GTTGCCATTTGGATGTGCCTGGTGA
LOC_Os04g28170
OsAffx.26198.1.S1_at--305--7471Chr04:16452873..16452897 (25 bp)
GTGTGCTTAAGAATAGTCCTCATGA
LOC_Os04g28170
OsAffx.26198.1.S1_at--1020--1131Chr04:16452859..16452883 (25 bp)
AGTCCTCATGATGGCACATACCAAG
LOC_Os04g28170
OsAffx.26198.1.S1_at--192--6791Chr04:16452831..16452855 (25 bp)
GTTTTAATCCTACAAGCAGTTCTTA
LOC_Os04g28170
OsAffx.26198.1.S1_at--646--5431Chr04:16452725..16452749 (25 bp)
GAACCATGGCACGAGGGATTCATAT
LOC_Os04g28170
OsAffx.26198.1.S1_at--961--8191Chr04:16452685..16452709 (25 bp)
GGAAGTCATCAACGCCAGTACCAGA
LOC_Os04g28170
OsAffx.26198.1.S1_at--881--2791Chr04:16452406..16452429 (24 bp)
AAGATCAGTGTCTGTGACTCAAGAT
LOC_Os04g28170
OsAffx.26198.1.S1_at--192--1291Chr04:16452369..16452393 (25 bp)
AGATCTGATCCCCAAAGCGCATATT
LOC_Os04g28170
OsAffx.26198.1.S1_at--942--7591Chr04:16452300..16452324 (25 bp)
GGGCAGCGTGAGATATACCATGATG
LOC_Os04g28170
Target Sequence 
ATCACGCCGAGTAGATAGCCAGGAATTTGGTAGAGTCAAGACTAGAGAGGAGCTTTTAGCTGAAGAGCGAGATTACAAGC
GAAGAAGAACGTCGTACCGTGGCAAGAAAGCGAAGAGAAATCCAAAAGAGATTTTAAGAGACATAATTGATGAGCATATG
GAAGAGATCAAACAGGCAGGAGGGATTGGTTGCCATTTGGATGTGCCTGGTGATATTGCACAGAGTGTGCTTAAGAATAG
TCCTCATGATGGCACATACCAAGGAAGTTTTAATCCTACAAGCAGTTCTTATGTTTCATCAAGGAACCATGGCACGAGGG
ATTCATATAAGGACTTAAGAAATGGAAGTCATCAACGCCAGTACCAGAAAGTATCTGATCATGAGAATAGAAGTATTAAA
GATTCAGAAAGCACAGTAGATCAAAGATCAGTGTCTGTGACTCAAGATAAGTTCAGTGATAGATCTGATCCCCAAAGCGC
ATATTCTGATGTTGATCCTGCAACAAGCATGATTGATGAGGCGTCTACGGGGCAGCGTGAGATATACCATGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26198.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis