Browse Element(s) Details


OsAffx.26210.1.S1_at

Description tigr:9632.m02689
TID=OsAffx.26210.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2848011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g28460Os.51607.1.A1_at11/114+16655894..16657487Phospholipid-transporting ATPase 2, putative, expressed
LOC_Os04g28470NANA4+16672992..16675162retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g28480Os.40031.1.S1_a_at11/114+16677398..16682701expressed protein
LOC_Os04g28480Os.40031.3.S1_at11/114+16677398..16682701expressed protein
LOC_Os04g28480OsAffx.26210.1.S1_at11/114+16677398..16682701expressed protein
LOC_Os04g28480Os.40031.3.S1_x_at11/114+16677398..16682701expressed protein
LOC_Os04g28480Os.40031.2.S1_x_at10/114+16677398..16682701expressed protein
LOC_Os04g28490OsAffx.3931.1.S1_at11/114+16688479..16689379hypothetical protein
LOC_Os04g28500NANA4+16690233..16690616hypothetical protein
LOC_Os04g28520Os.8413.2.A1_a_at10/114+16695262..16702466fatty acyl coA reductase, putative
LOC_Os04g28520Os.8413.2.A1_x_at7/114+16695262..16702466fatty acyl coA reductase, putative
LOC_Os04g28520Os.8413.2.A1_at3/114+16695262..16702466fatty acyl coA reductase, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26210.1.S1_at--958--10531Chr04:16677548..16677572 (25 bp)
TTCATGTTTGAGATGTCTTTCCATC
LOC_Os04g28480
OsAffx.26210.1.S1_at--845--10251Chr04:16677542..16677566 (25 bp)
TTTGAGATGTCTTTCCATCATCCTG
LOC_Os04g28480
OsAffx.26210.1.S1_at--36--8911Chr04:16677540..16677564 (25 bp)
TGAGATGTCTTTCCATCATCCTGCA
LOC_Os04g28480
OsAffx.26210.1.S1_at--403--1311Chr04:16677538..16677562 (25 bp)
AGATGTCTTTCCATCATCCTGCATA
LOC_Os04g28480
OsAffx.26210.1.S1_at--371--10411Chr04:16677507..16677531 (25 bp)
TTATTCGTTCCCTTTGTTGTACTAT
LOC_Os04g28480
OsAffx.26210.1.S1_at--970--71Chr04:16677505..16677529 (25 bp)
ATTCGTTCCCTTTGTTGTACTATAG
LOC_Os04g28480
OsAffx.26210.1.S1_at--524--9131Chr04:16677503..16677527 (25 bp)
TCGTTCCCTTTGTTGTACTATAGTT
LOC_Os04g28480
OsAffx.26210.1.S1_at--1087--9311Chr04:16677499..16677523 (25 bp)
TCCCTTTGTTGTACTATAGTTACAT
LOC_Os04g28480
OsAffx.26210.1.S1_at--1002--6991Chr04:16677489..16677513 (25 bp)
GTACTATAGTTACATAATCATGTGA
LOC_Os04g28480
OsAffx.26210.1.S1_at--604--411Chr04:16677473..16677497 (25 bp)
ATCATGTGAAAGTTAATATTGTCAT
LOC_Os04g28480
OsAffx.26210.1.S1_at--993--3571Chr04:16677451..16677475 (25 bp)
CATATTTTGCAGATTCACTGCTTAT
LOC_Os04g28480
Target Sequence 
TTCATGTTTGAGATGTCTTTCCATCATCCTGCATATTATTTTTATTCGTTCCCTTTGTTGTACTATAGTTACATAATCAT
GTGAAAGTTAATATTGTCATATTTTGCAGATTCACTGCTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26210.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis