Browse Element(s) Details


OsAffx.26226.2.S1_at

Description tigr:9632.m02772
TID=OsAffx.26226.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2931011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g29270OsAffx.25007.2.S1_s_at8/114+17160605..17167528retrotransposon protein, putative, unclassified
LOC_Os04g29270OsAffx.25007.2.S1_at7/114+17160605..17167528retrotransposon protein, putative, unclassified
LOC_Os04g29270OsAffx.25007.1.S1_at4/114+17160605..17167528retrotransposon protein, putative, unclassified
LOC_Os04g29280OsAffx.26225.1.S1_at11/114+17176934..17177342hypothetical protein
LOC_Os04g29280OsAffx.26225.1.S1_x_at11/114+17176934..17177342hypothetical protein
LOC_Os04g29290NANA4+17178425..17180699retrotransposon protein, putative, unclassified
LOC_Os04g29300OsAffx.26226.3.S1_s_at11/114+17185520..17187443hypothetical protein
LOC_Os04g29300OsAffx.26226.3.S1_at5/114+17185520..17187443hypothetical protein
LOC_Os04g29300Os.33800.1.S1_at5/114+17185520..17187443hypothetical protein
LOC_Os04g29310OsAffx.26226.2.S1_at11/114+17188081..17195882hypothetical protein
LOC_Os04g29310OsAffx.26226.1.S1_at6/114+17188081..17195882hypothetical protein
LOC_Os04g29320Os.27435.1.S1_x_at4/114+17210692..17215150transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g29320OsAffx.22421.2.S1_at3/114+17210692..17215150transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g29320Os.46334.1.S1_x_at1/114+17210692..17215150transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g29320Os.46334.1.S1_at1/114+17210692..17215150transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g29330NANA4+17216770..17223523retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26226.2.S1_at--605--6792Chr04:17195318..17195342 (25 bp)
GTTTCAGACAACTCGATTAGCGTTT
LOC_Os04g29310
OsAffx.26226.2.S1_at--1039--1632Chr04:17195336..17195360 (25 bp)
AGCGTTTGATCCTTTCAAGCCTAAC
LOC_Os04g29310
OsAffx.26226.2.S1_at--873--412Chr04:17195397..17195421 (25 bp)
ATCATTGCTCTGGAAGGTATACCCC
LOC_Os04g29310
OsAffx.26226.2.S1_at--697--7152Chr04:17195511..17195535 (25 bp)
GTCTCAATTTTTAGGCTTGCAGCTT
LOC_Os04g29310
OsAffx.26226.2.S1_at--982--2432Chr04:17195588..17195612 (25 bp)
AAAAGGTCCTCAACATACAAGCAAG
LOC_Os04g29310
OsAffx.26226.2.S1_at--649--32Chr04:17195617..17195641 (25 bp)
ATTGGGACCGTGAGGCTGCAACTGC
LOC_Os04g29310
OsAffx.26226.2.S1_at--1070--4751Chr04:17195631..17195655 (25 bp)
GCTGCAACTGCTTCTATCTTAGTGC
LOC_Os04g29310
OsAffx.26226.2.S1_at--704--4871Chr04:17195666..17195690 (25 bp)
GCTATTTGACTACTCTGATGACGGT
LOC_Os04g29310
OsAffx.26226.2.S1_at--905--4331Chr04:17195743..17195767 (25 bp)
CCAGGGTTCCTGTCATCATGAATTT
LOC_Os04g29310
OsAffx.26226.2.S1_at--1153--6952Chr04:17195784..17195808 (25 bp)
GTAGCGGACTCAAATCAAGGGCCTT
LOC_Os04g29310
OsAffx.26226.2.S1_at--1143--3072Chr04:17195796..17195820 (25 bp)
AATCAAGGGCCTTCCGAAGCAGCAT
LOC_Os04g29310
Target Sequence 
GTTTCAGACAACTCGATTAGCGTTTGATCCTTTCAAGCCTAACATGCACAGTGTAAAGAACCCATTGAGACAAAGAGTTA
TCATTGCTCTGGAAGGTATACCCCCAGAAACATGGAATAATGAGGCAATACCTGAACTATTGGACAATAGTTGTATGGTA
GAAGAAATCTATGAGCAGTATCATATACAAGATGTCTCAATTTTTAGGCTTGCAGCTTGGACAATATATGTTAATCTGAT
ACCAAAGATTATGGACTGGAACATTGAAACAAAAGGTCCTCAACATACAAGCAAGGTTGATTGGGACCGTGAGGCTGCAA
CTGCTTCTATCTTAGTGCATATTGAAAAGCTATTTGACTACTCTGATGACGGTAGTGGCAGTGATACAGATGGAGAGATG
CTGAGACACTATGAGGAAACAAACTCCAGGGTTCCTGTCATCATGAATTTTCAGTGGACACCAAGAGTAGCGGACTCAAA
TCAAGGGCCTTCCGAAGCAGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26226.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis