Browse Element(s) Details


OsAffx.26257.1.S1_at

Description tigr:9632.m02910
TID=OsAffx.26257.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3068011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30660OsAffx.26258.1.S1_at11/114+18131253..18135073NB-ARC domain containing protein, expressed
LOC_Os04g30670OsAffx.3958.1.S1_at10/114+18140203..18141790hypothetical protein
LOC_Os04g30680OsAffx.26257.1.S1_at11/114+18151090..18151467hypothetical protein
LOC_Os04g30680OsAffx.6583.1.S1_at1/114+18151090..18151467hypothetical protein
LOC_Os04g30690OsAffx.26258.2.S1_at11/114+18153480..18157126NB-ARC domain containing protein
LOC_Os04g30700NANA4+18166293..18169244hypothetical protein
LOC_Os04g30710Os.2741.4.S1_x_at6/114+18169767..18171331hypothetical protein
LOC_Os04g30720Os.49553.1.S1_at10/114+18173878..18178813Kinesin motor domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26257.1.S1_at--1146--9371Chr04:18151410..18151434 (25 bp)
TCGATGCGTCGTTCTGGTGCCGGAA
LOC_Os04g30680
OsAffx.26257.1.S1_at--202--691Chr04:18151350..18151374 (25 bp)
ATGACGCGGATGCAGCCCAGGGAGC
LOC_Os04g30680
OsAffx.26257.1.S1_at--622--7731Chr04:18151271..18151295 (25 bp)
GGTGGAAGTTTGTCAAGCGCTGCTT
LOC_Os04g30680
OsAffx.26257.1.S1_at--444--5331Chr04:18151267..18151291 (25 bp)
GAAGTTTGTCAAGCGCTGCTTGGAC
LOC_Os04g30680
OsAffx.26257.1.S1_at--341--10811Chr04:18151262..18151286 (25 bp)
TTGTCAAGCGCTGCTTGGACGAGAT
LOC_Os04g30680
OsAffx.26257.1.S1_at--315--71Chr04:18151168..18151189 (22 bp)
ATTGCTACCAGAACGACGGTGTGAT
LOC_Os04g30680
OsAffx.26257.1.S1_at--963--3391Chr04:18151160..18151184 (25 bp)
CAGAACGACGGTGTGATCCAGAAAC
LOC_Os04g30680
OsAffx.26257.1.S1_at--246--7471Chr04:18151150..18151174 (25 bp)
GTGTGATCCAGAAACCGTAAATTCA
LOC_Os04g30680
OsAffx.26257.1.S1_at--52--7032Chr10:2758703..2758726 (24 bp)
GTAAATTCAATTCCCAAAAAGCGAT
NONE
OsAffx.26257.1.S1_at--1038--9712Chr10:2758708..2758731 (24 bp)
TCAATTCCCAAAAAGCGATTAGCTG
NONE
OsAffx.26257.1.S1_at--833--4371Chr04:18151121..18151145 (25 bp)
CCAAAAAGCGATTAGCTGTTGCTAA
LOC_Os04g30680
Target Sequence 
TCGATGCGTCGTTCTGGTGCCGGAAAGGGTGGCCGGGATGGGCATGCGGCTGGGGGAAGGATGACGCGGATGCAGCCCAG
GGAGCAGGTGAGGCTCCGCGGCCTCCGCTTCCTCGACAAGACGTCCGACGGGAAGGAGGGGTGGAAGTTTGTCAAGCGCT
GCTTGGACGAGATGGCCGCCACCCCAAGGAGAGCTTCGGCAAGTGCATTGCTACCAGAACGACGGTGTGATCCAGAAACC
GTAAATTCAATTCCCAAAAAGCGATTAGCTGTTGCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26257.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis