Browse Element(s) Details


OsAffx.26306.2.S1_at

Description tigr:9634.m01689
TID=OsAffx.26306.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1678011/11hypothetical protein
LOC_Os04g333405/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g16760Os.27435.1.S1_x_at4/116+9708411..9709587hypothetical protein
LOC_Os06g16770OsAffx.4851.1.S1_x_at11/116+9711602..9711993expressed protein
LOC_Os06g16780OsAffx.26306.1.S1_s_at11/116+9713062..9713694hypothetical protein
LOC_Os06g16780OsAffx.26306.2.S1_at11/116+9713062..9713694hypothetical protein
LOC_Os06g16790OsAffx.27677.1.S1_at11/116+9714215..9723860NB-ARC domain containing protein, expressed
LOC_Os06g16790OsAffx.27677.1.S1_s_at11/116+9714215..9723860NB-ARC domain containing protein, expressed
LOC_Os06g16800OsAffx.28610.4.S1_s_at11/116+9728463..9729124hypothetical protein
LOC_Os06g16800OsAffx.28610.4.S1_x_at11/116+9728463..9729124hypothetical protein
LOC_Os06g16800OsAffx.28610.2.S1_x_at5/116+9728463..9729124hypothetical protein
LOC_Os06g16800OsAffx.28610.3.S1_at2/116+9728463..9729124hypothetical protein
LOC_Os06g16810OsAffx.4854.1.S1_at11/116+9733901..9734545Polygalacturonase precursor, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26306.2.S1_at--538--1172Chr06:9713135..9713159 (25 bp)
AGTACAGAGGTGATAGCCAGCCGCC
LOC_Os06g16780
OsAffx.26306.2.S1_at--289--9872Chr06:9713137..9713161 (25 bp)
TACAGAGGTGATAGCCAGCCGCCGC
LOC_Os06g16780
OsAffx.26306.2.S1_at--985--7771Chr06:9713181..9713205 (25 bp)
GGTGCCGACGCCTGTCTGCCAAGAA
LOC_Os06g16780
OsAffx.26306.2.S1_at--511--4511Chr06:9713184..9713208 (25 bp)
GCCGACGCCTGTCTGCCAAGAAGAA
LOC_Os06g16780
OsAffx.26306.2.S1_at--750--7492Chr06:9713212..9713236 (25 bp)
GTGGTGGAGCTTTCGACGGCCAACA
LOC_Os06g16780
OsAffx.26306.2.S1_at--1109--8531Chr06:9713216..9713240 (25 bp)
TGGAGCTTTCGACGGCCAACACGTT
LOC_Os06g16780
OsAffx.26306.2.S1_at--208--10311Chr06:9713222..9713246 (25 bp)
TTTCGACGGCCAACACGTTGTCGCT
LOC_Os06g16780
OsAffx.26306.2.S1_at--226--1951Chr06:9713227..9713251 (25 bp)
ACGGCCAACACGTTGTCGCTCTGCT
LOC_Os06g16780
OsAffx.26306.2.S1_at--764--2171Chr06:9713234..9713258 (25 bp)
ACACGTTGTCGCTCTGCTTCTCAGG
LOC_Os06g16780
OsAffx.26306.2.S1_at--943--8712Chr06:9713240..9713264 (25 bp)
TGTCGCTCTGCTTCTCAGGCGTGCA
LOC_Os06g16780
OsAffx.26306.2.S1_at--147--9492Chr06:9713246..9713270 (25 bp)
TCTGCTTCTCAGGCGTGCACGCTGT
LOC_Os06g16780
Target Sequence 
AGTACAGAGGTGATAGCCAGCCGCCGCCGTCGTCGTCACCGGCGGCGGTGCCGACGCCTGTCTGCCAAGAAGAAGCGGTG
GTGGAGCTTTCGACGGCCAACACGTTGTCGCTCTGCTTCTCAGGCGTGCACGCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26306.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis