Browse Element(s) Details


OsAffx.26384.5.S1_x_at

Description gb:AK063769.1
DB_XREF= gi:32973787
TID=OsAffx.26384.5
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-121-B10, full insert sequence.
FL= gb:AK063769.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5713011/11Cell differentiation protein rcd1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57090OsAffx.22655.1.S1_at10/113+32490276..32493417transmembrane ARV1-like family protein, putative
LOC_Os03g57100Os.7300.1.S1_at11/113+32493480..32499105Serologically defined breast cancer antigen NY-BR-84, putative, expressed
LOC_Os03g57110Os.20638.1.S2_at11/113+32499285..32504041expressed protein
LOC_Os03g57110Os.20638.1.S1_at11/113+32499285..32504041expressed protein
LOC_Os03g57120Os.141.1.S1_at11/113+32505395..32508261Ferredoxin-NADP reductase, root isozyme, chloroplast precursor, putative, expressed
LOC_Os03g57130OsAffx.26384.5.S1_x_at11/113+32508990..32514958Cell differentiation protein rcd1, putative, expressed
LOC_Os03g57140Os.6875.1.S1_at11/113+32520911..32523519expressed protein
LOC_Os03g57160Os.24550.1.S1_at11/113+32530682..32537963expressed protein
LOC_Os03g57170Os.49156.1.S1_at10/113+32538196..32541150LEM3 family/CDC50 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26384.5.S1_x_at--829--10271Chr03:32509799..32509823 (25 bp)
TTTGCCGTAGCCAGTGTTCTATCAC
LOC_Os03g57130
OsAffx.26384.5.S1_x_at--1031--371Chr03:32509779..32509803 (25 bp)
ATCACAGATGGTTCAGGCACTTGCT
LOC_Os03g57130
OsAffx.26384.5.S1_x_at--1062--3151Chr03:32509588..32509628 (25 bp)
AATTCCAGGGCATGTACCGCGCTGA
LOC_Os03g57130
OsAffx.26384.5.S1_x_at--1140--3631Chr03:32509392..32509544 (25 bp)
CTTCCTCCAGGATGATCATGTCACA
LOC_Os03g57130
OsAffx.26384.5.S1_x_at--1064--751Chr03:32509375..32509399 (25 bp)
ATGTCACAAGGCGTTGGCTCCAGCA
LOC_Os03g57130
OsAffx.26384.5.S1_x_at--399--5071Chr03:32509353..32509377 (25 bp)
GCAGCTGCTGCACAACATGACTATG
LOC_Os03g57130
OsAffx.26384.5.S1_x_at--643--831Chr03:32509306..32509330 (25 bp)
ATGGAGGCCTTGATCACATCATGGG
LOC_Os03g57130
OsAffx.26384.5.S1_x_at--1140--5391Chr03:32509263..32509287 (25 bp)
GAAGCTGGCTGTTTGCAACTCATCA
LOC_Os03g57130
OsAffx.26384.5.S1_x_at--550--5691Chr03:32509216..32509240 (25 bp)
GACTAGTCCATCTGTAGTTAGCCTA
LOC_Os03g57130
OsAffx.26384.5.S1_x_at--101--2911Chr03:32509106..32509130 (25 bp)
AAGGTACTGCTTGCTATCCTGTGAT
LOC_Os03g57130
OsAffx.26384.5.S1_x_at--354--3391Chr03:32509056..32509080 (25 bp)
CAGCTCTCTGCACAAGTAGTTCTCA
LOC_Os03g57130
Target Sequence 
TTTGCCGTAGCCAGTGTTCTATCACAGATGGTTCAGGCACTTGCTGATCAACCTTCTCCAAGACTGCTGAAGCACATAAT
TCGCTGCTACCTCAGGCTGTCAGAAAATTCCAGGGCATGTACCGCGCTGAACAGCTGCCTCCCCAACGCGCTGAAAGATG
GAACCCTCAACAACTTCCTCCAGGATGATCATGTCACAAGGCGTTGGCTCCAGCAGCTGCTGCACAACATGACTATGGCC
GGCATGGGAGGAGCTCCTCATGGAGGCCTTGATCACATCATGGGGATGTGATCATCTGAAACGAAGCTGGCTGTTTGCAA
CTCATCATATGCCTGAAGTCAGGACTCAGGACTAGTCCATCTGTAGTTAGCCTACCAAAAGGATTATACTTTTAGTTTTA
CCTTTAAAAAGAAATGGCGTGTGCCATTGAAGGATAAGAAATGTGTTGGTTGTAGTTAAAAGGTACTGCTTGCTATCCTG
TGATGCTGTAAAAATGCAACAGAATTGCGCAGCTCTCTGCACAAGTAGTTCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26384.5.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis