Browse Element(s) Details


OsAffx.26395.1.S1_x_at

Description tigr:9632.m03778
TID=OsAffx.26395.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to cyanogenic beta-glucosidase precursor (ec 3.2.1.21) (linamarase) (fragment). (creeping white clover
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3981410/11Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g398803/11Non-cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g398402/11Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g398642/11Non-cyanogenic beta-glucosidase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39750NANA4+23470442..23472169transposon protein, putative, unclassified
LOC_Os04g39760NANA4+23472816..23475847retrotransposon protein, putative, unclassified
LOC_Os04g39770OsAffx.26393.1.S1_at11/114+23478110..23478796hypothetical protein
LOC_Os04g39780OsAffx.4032.1.S1_x_at11/114+23479565..23488249AMP-binding enzyme family protein, expressed
LOC_Os04g39780OsAffx.4032.1.S1_at11/114+23479565..23488249AMP-binding enzyme family protein, expressed
LOC_Os04g39800NANA4+23491058..23491324hypothetical protein
LOC_Os04g39814Os.10238.1.S1_at11/114+23496347..23502631Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39814OsAffx.26395.1.S1_x_at10/114+23496347..23502631Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39814OsAffx.14210.1.S1_at4/114+23496347..23502631Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39814OsAffx.18631.1.A1_at1/114+23496347..23502631Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39830OsAffx.9230.1.S1_x_at1/114+23506114..23507947hypothetical protein
LOC_Os04g39840Os.10324.2.S1_at11/114+23509148..23512832Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39840OsAffx.14210.1.S1_at3/114+23509148..23512832Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39840OsAffx.26395.1.S1_x_at2/114+23509148..23512832Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39840Os.15766.1.S1_at1/114+23509148..23512832Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39850NANA4+23513743..23514420expressed protein
LOC_Os04g39864OsAffx.14211.1.S1_at10/114+23516223..23523475Non-cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39864OsAffx.14210.1.S1_at9/114+23516223..23523475Non-cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39864OsAffx.26395.1.S1_x_at2/114+23516223..23523475Non-cyanogenic beta-glucosidase precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26395.1.S1_x_at--420--5211NONE
GAATTCTTCCAAGGGTCCAATCATT
NONE
OsAffx.26395.1.S1_x_at--684--6771Chr04:23499583..23499607 (25 bp)
GTTACCCTTTTCCATTATGACACAC
LOC_Os04g39814
OsAffx.26395.1.S1_x_at--1002--8951Chr04:23499566..23499590 (25 bp)
TGACACACCTCAGGCACTGGAAGAT
LOC_Os04g39814
OsAffx.26395.1.S1_x_at--920--952Chr04:23530844..23530868 (25 bp)
AGGACTATGCTGAAATCTGCTTCAA
LOC_Os04g39880
OsAffx.26395.1.S1_x_at--839--10854Chr04:23530795..23530819 (25 bp)
TTGGATCACCTTCAATGAGCCTTGG
LOC_Os04g39880
OsAffx.26395.1.S1_x_at--66--10851Chr04:23498999..23499023 (25 bp)
TTGGATCTTCTGCTCTAAGGCCTAT
LOC_Os04g39814
OsAffx.26395.1.S1_x_at--787--9771Chr04:23498984..23499008 (25 bp)
TAAGGCCTATGCATCTGGCACCTAT
LOC_Os04g39814
OsAffx.26395.1.S1_x_at--131--5334Chr04:23530679..23530703 (25 bp)
GAAGGGAGCCTTACACTGCATGCCA
LOC_Os04g39880
OsAffx.26395.1.S1_x_at--482--10691Chr04:23498868..23498892 (25 bp)
TTGCCCACGCAGAAACTGTTCGGTT
LOC_Os04g39814
OsAffx.26395.1.S1_x_at--1129--2811Chr04:23498814..23498838 (25 bp)
AAGTTGTCAGGCAGTCGCAGTTCAT
LOC_Os04g39814
OsAffx.26395.1.S1_x_at--857--10411Chr04:23498731..23498755 (25 bp)
TTATTGCTTGGCATTCACTTTCAGC
LOC_Os04g39814
Target Sequence 
GAATTCTTCCAAGGGTCCAATCATTTGTTACCCTTTTCCATTATGACACACCTCAGGCACTGGAAGATAAATACAACGGA
TTTCTTAGCCCTAATATCATAAATGACTATAAGGACTATGCTGAAATCTGCTTCAAAGAGTTTGGTGACCGAGTGAAACA
TTGGATCACCTTCAATGAGCCTTGGATCTTCTGCTCTAAGGCCTATGCATCTGGCACCTATGCCCCGGGCCGGTGTTCAC
CCTGGGAGATGGGAAAATGCAGCGTTGGAGATTCAGGAAGGGAGCCTTACACTGCATGCCATCACCAACTACTTGCCCAC
GCAGAAACTGTTCGGTTGTACAGAGAGAAATATCAGTTCACTGAAGAAGTTGTCAGGCAGTCGCAGTTCATCCATGATAA
TGATTTACATCGAAGATCCGCAAAGTTAAGTTTCATAATCCAAAATTACTTATTGCTTGGCATTCACTTTCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26395.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis