Browse Element(s) Details


OsAffx.26399.1.S1_at

Description tigr:9632.m03795
TID=OsAffx.26399.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3997011/11vacuolar sorting protein 9 domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39900Os.8442.1.S1_at11/114+23543223..23549146Non-cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39900OsAffx.19953.4.S1_s_at1/114+23543223..23549146Non-cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39910NANA4+23550973..23553357D-mannose binding lectin family protein
LOC_Os04g39930Os.11392.2.S1_at1/114+23560082..23562487D-mannose binding lectin family protein
LOC_Os04g39940OsAffx.26397.1.S1_x_at11/114+23563270..23565722hypothetical protein
LOC_Os04g39940OsAffx.26397.1.S1_at11/114+23563270..23565722hypothetical protein
LOC_Os04g39950Os.27211.1.S1_at10/114+23566409..23568891expressed protein
LOC_Os04g39960OsAffx.26398.1.S1_at11/114+23570322..23571170expressed protein
LOC_Os04g39970OsAffx.26399.1.S1_at11/114+23571692..23573697vacuolar sorting protein 9 domain-containing protein, putative, expressed
LOC_Os04g39980Os.7806.1.S1_at11/114+23576312..23578418oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os04g39990NANA4+23581685..23587839retrotransposon protein, putative, unclassified
LOC_Os04g40000OsAffx.7292.1.S1_at1/114+23588460..23591443retrotransposon protein, putative, unclassified
LOC_Os04g40000OsAffx.7292.1.S1_x_at1/114+23588460..23591443retrotransposon protein, putative, unclassified
LOC_Os04g40010OsAffx.14212.1.S1_at11/114+23596314..23597951hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26399.1.S1_at--34--2311Chr04:23572215..23572239 (25 bp)
AAAGGCCTTGAGTCCCTAGGAGAGA
LOC_Os04g39970
OsAffx.26399.1.S1_at--795--6011Chr04:23572196..23572220 (25 bp)
GAGAGATGGGTCTATCTGCTGATAT
LOC_Os04g39970
OsAffx.26399.1.S1_at--625--891Chr04:23572163..23572187 (25 bp)
AGGCGCAGAACGATTACGGTGACTT
LOC_Os04g39970
OsAffx.26399.1.S1_at--909--1911Chr04:23572148..23572172 (25 bp)
ACGGTGACTTGGACTTTCTTGATGA
LOC_Os04g39970
OsAffx.26399.1.S1_at--788--4951Chr04:23572091..23572115 (25 bp)
GCATTTGGCGAGGTTCATCGCTCAT
LOC_Os04g39970
OsAffx.26399.1.S1_at--1075--10451Chr04:23572043..23572067 (25 bp)
TTAGCTCTTAACAGGATGTGTCACT
LOC_Os04g39970
OsAffx.26399.1.S1_at--269--7411Chr04:23572014..23572038 (25 bp)
GTGATCTTACCACTCTATCTAATCT
LOC_Os04g39970
OsAffx.26399.1.S1_at--1161--5091Chr04:23571965..23571989 (25 bp)
GCACGGTTGCGTACATGGTTGTTTG
LOC_Os04g39970
OsAffx.26399.1.S1_at--670--6491Chr04:23571877..23571901 (25 bp)
GATAGACATTGCACCCAGCAGAATT
LOC_Os04g39970
OsAffx.26399.1.S1_at--451--5771Chr04:23571841..23571865 (25 bp)
GACGACTTATACTCACCTGATCATT
LOC_Os04g39970
OsAffx.26399.1.S1_at--99--651Chr04:23571725..23571749 (25 bp)
ATGCATTGCTGCCTTGTACTTGAAC
LOC_Os04g39970
Target Sequence 
AAAGGCCTTGAGTCCCTAGGAGAGATGGGTCTATCTGCTGATATAAAGTTGGAGGCGCAGAACGATTACGGTGACTTGGA
CTTTCTTGATGAAGAGGAGATGATCGATACTCTGGAACAAAAGAGCATTTGGCGAGGTTCATCGCTCATCGCGGAGAATA
GGAGGGCACGAATTAGCTCTTAACAGGATGTGTCACTGGTAGTGATCTTACCACTCTATCTAATCTGCATTTCAGTATTT
GTGAAACTTAGCACGGTTGCGTACATGGTTGTTTGACTGTTTGACAAGGAGATCATTGTGAAATACCAGGAAGCTTTTAG
TATAGATGAGAAGAATATGATAGACATTGCACCCAGCAGAATTTGATGACTGGTGACGACTTATACTCACCTGATCATTC
TAATGTAGAAGAAAGCATATCTGAGATCTTTTTTATGTTCATGCTTTTTTCCATAGATTTTTTCCCCCTTAAAAAGTTCT
GTGTATAATCATGCATTGCTGCCTTGTACTTGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26399.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis