Browse Element(s) Details


OsAffx.26412.1.S1_at

Description tigr:9632.m03897
TID=OsAffx.26412.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ATP-dependent DNA helicase, RecQ family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4097011/11ATP-dependent DNA helicase, RecQ family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40920Os.51645.1.S1_at11/114+24074963..24076626expressed protein
LOC_Os04g40930Os.18963.1.S1_a_at11/114+24077363..24082114DNA binding protein GT-1, putative, expressed
LOC_Os04g40940Os.6028.1.S1_at10/114+24082347..24084087Mitotic spindle checkpoint protein MAD2, putative, expressed
LOC_Os04g40950Os.28374.1.S1_at11/114+24086354..24090052Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3, putative, expressed
LOC_Os04g40950Os.57475.1.S1_x_at1/114+24086354..24090052Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3, putative, expressed
LOC_Os04g40960OsAffx.14225.1.S1_x_at11/114+24090485..24091054F-box domain containing protein
LOC_Os04g40960OsAffx.14225.1.S1_at11/114+24090485..24091054F-box domain containing protein
LOC_Os04g40970OsAffx.26412.1.S1_at11/114+24093561..24100010ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os04g40980Os.10104.1.S1_at11/114+24102280..24106649Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os04g40990Os.26687.1.S1_at11/114+24106676..24109146Malate synthase, glyoxysomal, putative, expressed
LOC_Os04g41000NANA4+24115079..24115509hypothetical protein
LOC_Os04g41010NANA4+24116449..24116667hypothetical protein
LOC_Os04g41020Os.54586.1.S1_at11/114+24120514..24124686Kelch motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000724biological_processdouble-strand break repair via homologous recombination
GO:0006974biological_processresponse to DNA damage stimulus
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26412.1.S1_at--547--5571Chr04:24098983..24099007 (25 bp)
GAAAGATCCTGCTTACTGTTATGTG
LOC_Os04g40970
OsAffx.26412.1.S1_at--1120--8431Chr04:24099018..24099042 (25 bp)
GGCCAGATGACTTCAATGCTCTTTC
LOC_Os04g40970
OsAffx.26412.1.S1_at--1094--10031Chr04:24099335..24099359 (25 bp)
TAGATGCTATGTTTGCTCTTGCAAA
LOC_Os04g40970
OsAffx.26412.1.S1_at--960--8011Chr04:24099388..24099412 (25 bp)
GGAGGATGCTCTGGTTCCCAGCACA
LOC_Os04g40970
OsAffx.26412.1.S1_at--81--3311Chr04:24099409..24099433 (25 bp)
CACACTCCGTGCATTCAGAAGAAGA
LOC_Os04g40970
OsAffx.26412.1.S1_at--918--71Chr04:24099476..24099500 (25 bp)
ATTGCCGCACTCAGCTGCAGAAGAG
LOC_Os04g40970
OsAffx.26412.1.S1_at--1118--1651Chr04:24099619..24099643 (25 bp)
AGCCCATTCTTGCAAGCCGATATAA
LOC_Os04g40970
OsAffx.26412.1.S1_at--53--9551Chr04:24099746..24099770 (25 bp)
TCATTCGCAAAGTTCACCCCGAGGG
LOC_Os04g40970
OsAffx.26412.1.S1_at--230--4211Chr04:24099762..24099786 (25 bp)
CCCCGAGGGCTGTTGCGAGGATTAT
LOC_Os04g40970
OsAffx.26412.1.S1_at--89--6171Chr04:24099778..24099802 (25 bp)
GAGGATTATGCACGGCATCTCGAGC
LOC_Os04g40970
OsAffx.26412.1.S1_at--190--8011Chr04:24099932..24099956 (25 bp)
GGAGGTTGATTTTCCACTGGTCATG
LOC_Os04g40970
Target Sequence 
GAAAGATCCTGCTTACTGTTATGTGATCTTGTGGAGGCCAGATGACTTCAATGCTCTTTCAGCAAATCTCACAAAATGGC
TTTCTGAAGTAGAAAGCTCAAAGATCAGTAAGTTAGATGCTATGTTTGCTCTTGCAAACTTTGCTGTCAAAGGGTGTAAA
AGGACGGGAGGATGCTCTGGTTCCCAGCACACTCCGTGCATTCAGAAGAAGATTATGGAGTACTTCAGCAAGGACGATGG
CACCTCAGAGAATGATTGCCGCACTCAGCTGCAGAAGAGCAGCCCATTCTTGCAAGCCGATATAAAGGTGTTCATTCAAA
GCAACTCATTCGCAAAGTTCACCCCGAGGGCTGTTGCGAGGATTATGCACGGCATCTCGAGCCCTGCTTTTCCATCTGTC
ACTTGGTCCAAAAATCACTTCTGGGGACGTTATGTGGAGGTTGATTTTCCACTGGTCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26412.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis