Browse Element(s) Details


OsAffx.26416.1.S1_at

Description tigr:9632.m03956
TID=OsAffx.26416.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to protein kinase like
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4151011/11RWD domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41490Os.50375.1.S1_at11/114+24374140..24385013RNA polymerase Rpb1, domain 2 family protein, expressed
LOC_Os04g41500Os.6044.1.S1_at11/114+24392251..24396065expressed protein
LOC_Os04g41510OsAffx.26416.1.S1_at11/114+24396460..24405557RWD domain containing protein, expressed
LOC_Os04g41510Os.52463.1.S1_x_at9/114+24396460..24405557RWD domain containing protein, expressed
LOC_Os04g41520Os.45957.4.S1_x_at1/114+24406296..24411088retrotransposon protein, putative, unclassified
LOC_Os04g41530Os.24642.1.S1_at4/114+24412136..24416746serine/threonine-protein kinase GCN2, putative
LOC_Os04g41540OsAffx.14232.1.S1_x_at11/114+24421526..24422116EF hand family protein
LOC_Os04g41550Os.11863.2.S1_at11/114+24425118..24428768group II intron splicing factor CRS1, putative, expressed
LOC_Os04g41550Os.11863.3.S1_at11/114+24425118..24428768group II intron splicing factor CRS1, putative, expressed
LOC_Os04g41550Os.11863.1.S1_x_at11/114+24425118..24428768group II intron splicing factor CRS1, putative, expressed
LOC_Os04g41560Os.12805.1.S1_at11/114+24428811..24430302B-box zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006987biological_processunfolded protein response, activation of signaling protein activity
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005829cellular_componentcytosol
GO:0042406cellular_componentextrinsic to endoplasmic reticulum membrane
GO:0004521molecular_functionendoribonuclease activity
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26416.1.S1_at--130--2091Chr04:24404669..24404693 (25 bp)
ACATATTTTTATACAGCGCCTGAGG
LOC_Os04g41510
OsAffx.26416.1.S1_at--134--5671Chr04:24404864..24404888 (25 bp)
GACATGTACAGCTTAGGAGTTATAT
LOC_Os04g41510
OsAffx.26416.1.S1_at--1042--8031Chr04:24404879..24404903 (25 bp)
GGAGTTATATTCTTTGAGCTTTGGT
LOC_Os04g41510
OsAffx.26416.1.S1_at--219--5911Chr04:24404894..24404918 (25 bp)
GAGCTTTGGTATCCATTTTCAACAG
LOC_Os04g41510
OsAffx.26416.1.S1_at--1083--5171Chr04:24404918..24404942 (25 bp)
GCAATGGAAAGGCATCTTGTTCTTT
LOC_Os04g41510
OsAffx.26416.1.S1_at--123--911Chr04:24404959..24404983 (25 bp)
AGGCGATTCTCCATTGTCATGGGCA
LOC_Os04g41510
OsAffx.26416.1.S1_at--1134--791Chr04:24404977..24405001 (25 bp)
ATGGGCAACACAGTTCCCTGGCCAG
LOC_Os04g41510
OsAffx.26416.1.S1_at--877--4171Chr04:24404992..24405016 (25 bp)
CCCTGGCCAGTCAAACCTATTGAGG
LOC_Os04g41510
OsAffx.26416.1.S1_at--552--10231Chr04:24405009..24405033 (25 bp)
TATTGAGGCGCCTACTGTCTCCAAG
LOC_Os04g41510
OsAffx.26416.1.S1_at--896--471Chr04:24405037..24405061 (25 bp)
ATCTGACCGTCCATCTGCTGTTGAA
LOC_Os04g41510
OsAffx.26416.1.S1_at--726--10591Chr04:24405063..24405087 (25 bp)
TTCTGCAAAATGATCTACCTCCTCG
LOC_Os04g41510
Target Sequence 
ACATATTTTTATACAGCGCCTGAGGTAGAACAGAAATGGCCACATATAAACGAGAAGGTTGACATGTACAGCTTAGGAGT
TATATTCTTTGAGCTTTGGTATCCATTTTCAACAGCAATGGAAAGGCATCTTGTTCTTTCTGATCTCAAACAAAAAGGCG
ATTCTCCATTGTCATGGGCAACACAGTTCCCTGGCCAGTCAAACCTATTGAGGCGCCTACTGTCTCCAAGTCCATCTGAC
CGTCCATCTGCTGTTGAACTTCTGCAAAATGATCTACCTCCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26416.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis