Browse Element(s) Details


OsAffx.26459.1.S1_at

Description tigr:9632.m04263
TID=OsAffx.26459.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to BT004805 At5g23230
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4442011/11isochorismatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44370OsAffx.21308.1.S1_at5/114+26049574..26055408retrotransposon, putative, centromere-specific
LOC_Os04g44370OsAffx.25367.1.S1_at1/114+26049574..26055408retrotransposon, putative, centromere-specific
LOC_Os04g44370Os.20321.1.S1_at1/114+26049574..26055408retrotransposon, putative, centromere-specific
LOC_Os04g44380OsAffx.21308.2.S1_x_at1/114+26057963..26059095hypothetical protein
LOC_Os04g44390NANA4+26059728..26060489hypothetical protein
LOC_Os04g44400Os.50580.1.S1_at11/114+26065574..26066794ATP-dependent Clp protease proteolytic subunit, mitochondrial precursor, putative, expressed
LOC_Os04g44410Os.54573.1.S1_at11/114+26068479..26073053Serine carboxypeptidase family protein, expressed
LOC_Os04g44420OsAffx.26459.1.S1_at11/114+26077083..26077556isochorismatase family protein, expressed
LOC_Os04g44430Os.25524.1.S1_at11/114+26081183..26088576transporter, putative, expressed
LOC_Os04g44440Os.52097.1.S1_at11/114+26091520..26092590TCP family transcription factor containing protein, expressed
LOC_Os04g44450OsAffx.14265.1.S1_at11/114+26098419..26099927hypothetical protein
LOC_Os04g44460OsAffx.26460.1.S1_at11/114+26101366..26102406Sulfotransferase domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26459.1.S1_at--112--4131Chr04:26077438..26077462 (25 bp)
CGCTCGACGAGTGGTGGCCCGGCGA
LOC_Os04g44420
OsAffx.26459.1.S1_at--828--2771Chr04:26077337..26077361 (25 bp)
AAGAGCACGTACAGCGGCTTCGCCG
LOC_Os04g44420
OsAffx.26459.1.S1_at--1159--491Chr04:26077265..26077289 (25 bp)
ATCGTGACGGGCGTGATGACCAACC
LOC_Os04g44420
OsAffx.26459.1.S1_at--1064--5751Chr04:26077260..26077284 (25 bp)
GACGGGCGTGATGACCAACCTGTGC
LOC_Os04g44420
OsAffx.26459.1.S1_at--1002--7391Chr04:26077253..26077277 (25 bp)
GTGATGACCAACCTGTGCTGCGAGA
LOC_Os04g44420
OsAffx.26459.1.S1_at--277--691Chr04:26077250..26077274 (25 bp)
ATGACCAACCTGTGCTGCGAGACCA
LOC_Os04g44420
OsAffx.26459.1.S1_at--457--1771Chr04:26077243..26077267 (25 bp)
ACCTGTGCTGCGAGACCACGGCGCG
LOC_Os04g44420
OsAffx.26459.1.S1_at--436--9051Chr04:26077150..26077174 (25 bp)
TGCAGGAGGCGACGCTAGCCAACAT
LOC_Os04g44420
OsAffx.26459.1.S1_at--270--991Chr04:26077147..26077171 (25 bp)
AGGAGGCGACGCTAGCCAACATGGC
LOC_Os04g44420
OsAffx.26459.1.S1_at--16--4851Chr04:26077137..26077161 (25 bp)
GCTAGCCAACATGGCCTACGGATTC
LOC_Os04g44420
OsAffx.26459.1.S1_at--295--7931Chr04:26077125..26077149 (25 bp)
GGCCTACGGATTCGCCTACGTCGTC
LOC_Os04g44420
Target Sequence 
CGCTCGACGAGTGGTGGCCCGGCGACCGGATCGCCGACGGCACGCCGGCCGCCGAGCTCCTCCCGGGCTCGGGCCGCCGC
GAGGGCGACCTCGTGGTGGAGAAGAGCACGTACAGCGGCTTCGCCGGCACGGGGCTCGAGGAGGCGCTGCGGCGGATGGG
CGTGGAGGAGGTGATCGTGACGGGCGTGATGACCAACCTGTGCTGCGAGACCACGGCGCGGGACGCGTTCGTGAGGGGGT
TCCGGGTGTTCTTCTCGGCCGACGCCACCGCCACGGCGAGCCAGGACCTGCAGGAGGCGACGCTAGCCAACATGGCCTAC
GGATTCGCCTACGTCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26459.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis