Browse Element(s) Details


OsAffx.26471.1.A1_at

Description tigr:9632.m04347
TID=OsAffx.26471.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g026601/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02600Os.52984.1.S1_at10/113+938790..940869riboflavin biosynthesis protein RibD containing protein, expressed
LOC_Os03g02610Os.16862.1.S1_at11/113+942525..943662Glycosyl hydrolases family 16 protein, expressed
LOC_Os03g02610Os.16862.1.S1_s_at11/113+942525..943662Glycosyl hydrolases family 16 protein, expressed
LOC_Os03g02620NANA3+944590..944937hypothetical protein
LOC_Os03g02630Os.40360.1.S1_at6/113+946568..949140hypothetical protein
LOC_Os03g02630Os.40360.1.S1_x_at4/113+946568..949140hypothetical protein
LOC_Os03g02630Os.40855.5.S1_x_at3/113+946568..949140hypothetical protein
LOC_Os03g02640Os.52411.1.S1_at11/113+952949..956757expressed protein
LOC_Os03g02650Os.55877.1.S1_at11/113+957161..958115AP2 domain containing protein, expressed
LOC_Os03g02660Os.53330.1.S1_at11/113+964116..968105expressed protein
LOC_Os03g02660OsAffx.12144.2.A1_s_at11/113+964116..968105expressed protein
LOC_Os03g02660OsAffx.26471.1.A1_at1/113+964116..968105expressed protein
LOC_Os03g02670Os.27602.1.S1_at11/113+969463..973054UDP-galactose transporter, putative, expressed
LOC_Os03g02670Os.7088.1.S1_at1/113+969463..973054UDP-galactose transporter, putative, expressed
LOC_Os03g02680Os.11723.1.S1_s_at11/113+975945..979582Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g02680Os.11723.2.S1_s_at11/113+975945..979582Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g02680Os.11723.3.S1_at11/113+975945..979582Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g02680Os.11723.4.S1_x_at10/113+975945..979582Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g02690OsAffx.3115.1.S1_x_at11/113+982673..985614Dihydrodipicolinate reductase, C-terminus family protein, expressed
LOC_Os03g02690Os.49168.1.S1_s_at11/113+982673..985614Dihydrodipicolinate reductase, C-terminus family protein, expressed
LOC_Os03g02700OsAffx.12714.1.S1_x_at11/113+986728..988856GMC oxidoreductase family protein
LOC_Os03g02700OsAffx.12714.1.S1_at11/113+986728..988856GMC oxidoreductase family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26471.1.A1_at--438--6451Chr04:26502984..26503008 (25 bp)
GATAATCGCAGTTTGCGTCGGAACT
NONE
OsAffx.26471.1.A1_at--602--531Chr04:26502988..26503012 (25 bp)
ATCGCAGTTTGCGTCGGAACTCGGA
NONE
OsAffx.26471.1.A1_at--1042--6756Chr08:16504417..16504441 (25 bp)
GTTAAAAAGGCCCATCCAATCAATA
NONE
OsAffx.26471.1.A1_at--445--2953Chr08:16504423..16504447 (25 bp)
AAGGCCCATCCAATCAATAGTCCAT
NONE
OsAffx.26471.1.A1_at--544--8412Chr08:16504425..16504449 (25 bp)
GGCCCATCCAATCAATAGTCCATAA
NONE
OsAffx.26471.1.A1_at--80--3072Chr08:16504438..16504462 (25 bp)
AATAGTCCATAATCCCTCCCCAAGT
NONE
OsAffx.26471.1.A1_at--799--1811Chr04:26503115..26503139 (25 bp)
ACCCAAGCTGCTAACCCAAGAGAAG
NONE
OsAffx.26471.1.A1_at--898--4751Chr04:26503121..26503145 (25 bp)
GCTGCTAACCCAAGAGAAGAGAGTG
NONE
OsAffx.26471.1.A1_at--256--8552Chr06:1223953..1223979 (25 bp)
TGGAGAGAGAGAAGTCAGACAGATC
NONE
OsAffx.26471.1.A1_at--377--8093Chr08:16504544..16504568 (25 bp)
GGAGCGGCGCATCGCCATCCAGAGG
NONE
OsAffx.26471.1.A1_at--314--5793Chr06:1224279..1224303 (25 bp)
GACGACGAGACCACAGGCCACAGCC
NONE
Target Sequence 
GATAATCGCAGTTTGCGTCGGAACTCGGAATCGGTCGGAAACATTCCGGAAAATTTGTCGAAATTTCCGAAGTTAAAAAG
GCCCATCCAATCAATAGTCCATAATCCCTCCCCAAGTCCCCAGCCGGCCCAACCCAAGCTGCTAACCCAAGAGAAGAGAG
TGGAGAGAGAGAAGTCAGACAGATCGGGAGGGAGGCCGGGAGCGGCGCATCGCCATCCAGAGGCGGCGGCGGAGCGGCGC
ATCCAGAGCGCGCCACCACCCACCGCCGGCCTGCCGTCCTCGCTTCCTTGGCTCCCCGCGACCTCGCCCCCGCCGTCTCG
CATCTCGCGCCGCCCTTCCTCTTCGCTCCGTCCTCGCCCCCACCATCTCGCGGCGCCGTCCCGCCGCCTCTCGCCTTTTC
GCCGCTGCCACCACCACCGACGAGGCGACGACGACGCCACAGCCACACCACCGACGCCGGCCATACCGACGACGACGCGA
CATCGACGACGAGACCACAGGCCACAGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26471.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis