Browse Element(s) Details

OsAffx.26476.3.S1_at

Description

tigr:9634.m02530
TID=OsAffx.26476.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g25520	10/11	hypothetical protein
LOC_Os01g40460	2/11	hypothetical protein
LOC_Os04g45890	2/11	Zinc knuckle family protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g25480	NA	NA	6	+	14898156..14901071	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25490	NA	NA	6	+	14901564..14905195	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25500	OsAffx.4936.1.S1_at	10/11	6	+	14905525..14914483	retrotransposon protein, putative, unclassified
LOC_Os06g25500	Os.50255.1.S1_at	6/11	6	+	14905525..14914483	retrotransposon protein, putative, unclassified
LOC_Os06g25500	Os.27790.2.A1_x_at	4/11	6	+	14905525..14914483	retrotransposon protein, putative, unclassified
LOC_Os06g25500	OsAffx.20354.1.S1_at	2/11	6	+	14905525..14914483	retrotransposon protein, putative, unclassified
LOC_Os06g25500	Os.26561.1.S1_at	2/11	6	+	14905525..14914483	retrotransposon protein, putative, unclassified
LOC_Os06g25500	Os.46995.1.S1_x_at	1/11	6	+	14905525..14914483	retrotransposon protein, putative, unclassified
LOC_Os06g25500	Os.49405.2.S1_x_at	1/11	6	+	14905525..14914483	retrotransposon protein, putative, unclassified
LOC_Os06g25510	NA	NA	6	+	14917278..14917625	hypothetical protein
LOC_Os06g25520	OsAffx.26476.3.S1_at	10/11	6	+	14921637..14925142	hypothetical protein
LOC_Os06g25520	Os.41248.5.S1_x_at	5/11	6	+	14921637..14925142	hypothetical protein
LOC_Os06g25520	Os.41248.2.A1_at	4/11	6	+	14921637..14925142	hypothetical protein
LOC_Os06g25520	Os.23964.2.S1_x_at	1/11	6	+	14921637..14925142	hypothetical protein
LOC_Os06g25530	OsAffx.27822.1.S1_x_at	11/11	6	+	14929151..14931307	expressed protein
LOC_Os06g25530	OsAffx.27822.1.S1_at	10/11	6	+	14929151..14931307	expressed protein
LOC_Os06g25540	OsAffx.27823.2.S1_at	11/11	6	+	14932982..14936275	hypothetical protein
LOC_Os06g25550	OsAffx.27823.1.S1_at	2/11	6	+	14936393..14940601	retrotransposon protein, putative, unclassified
LOC_Os06g25560	NA	NA	6	+	14942017..14942616	Zinc knuckle family protein
LOC_Os06g25570	OsAffx.15611.1.S1_at	11/11	6	+	14945394..14948087	hypothetical protein
LOC_Os06g25570	OsAffx.17848.1.S1_at	1/11	6	+	14945394..14948087	hypothetical protein
LOC_Os06g25570	OsAffx.17848.1.S1_x_at	1/11	6	+	14945394..14948087	hypothetical protein
LOC_Os06g25570	OsAffx.17848.2.S1_x_at	1/11	6	+	14945394..14948087	hypothetical protein
LOC_Os06g25570	OsAffx.17848.5.S1_x_at	1/11	6	+	14945394..14948087	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.26476.3.S1_at--354--209	3	Chr06:14922376..14922433 (25 bp)	ACATAGGCATCACATCTAGCTCATG	LOC_Os06g25520
OsAffx.26476.3.S1_at--949--827	3	Chr06:14922381..14922438 (25 bp)	GGCATCACATCTAGCTCATGTAGTA	LOC_Os06g25520
OsAffx.26476.3.S1_at--70--695	1	Chr03:2371016..2371279 (25 bp)	GTAGTACATCTAAGAAATATCACAT	NONE
OsAffx.26476.3.S1_at--230--309	1	Chr06:14924693..14924717 (25 bp)	AATATCACATAGGAAATGGACGAGA	LOC_Os06g25520
OsAffx.26476.3.S1_at--89--559	1	Chr06:14924705..14924729 (25 bp)	GAAATGGACGAGATGAGCACTTGTA	LOC_Os06g25520
OsAffx.26476.3.S1_at--1039--577	1	Chr06:14924711..14924735 (25 bp)	GACGAGATGAGCACTTGTATCTGCA	LOC_Os06g25520
OsAffx.26476.3.S1_at--269--631	1	Chr06:14924716..14924740 (25 bp)	GATGAGCACTTGTATCTGCAGATGC	LOC_Os06g25520
OsAffx.26476.3.S1_at--65--595	1	Chr06:14924719..14924743 (25 bp)	GAGCACTTGTATCTGCAGATGCTTA	LOC_Os06g25520
OsAffx.26476.3.S1_at--220--207	1	Chr06:14924723..14924747 (25 bp)	ACTTGTATCTGCAGATGCTTAGGCG	LOC_Os06g25520
OsAffx.26476.3.S1_at--906--689	1	Chr06:14924727..14924751 (25 bp)	GTATCTGCAGATGCTTAGGCGAAGT	LOC_Os06g25520
OsAffx.26476.3.S1_at--539--557	1	Chr06:14925093..14925112 (20 bp)	GAAATGGAGATCCATGATGATCACA	LOC_Os06g25520

Target Sequence

ACATAGGCATCACATCTAGCTCATGTAGTACATCTAAGAAATATCACATAGGAAATGGACGAGATGAGCACTTGTATCTG
CAGATGCTTAGGCGAAGTTTGGATTCCATTCAAAGGAAATGGAGATCCATGATGATCACA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis