Browse Element(s) Details


OsAffx.26496.1.S1_at

Description tigr:9632.m04548
TID=OsAffx.26496.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4713010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47100OsAffx.22848.3.S1_x_at2/114+27746726..27752684retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g47110OsAffx.14307.1.S1_at11/114+27761777..27762956hypothetical protein
LOC_Os04g47120Os.17954.1.S1_at11/114+27765032..27771465Acyl-CoA thioesterase family protein, expressed
LOC_Os04g47130OsAffx.26496.1.S1_at10/114+27771819..27773295expressed protein
LOC_Os04g47140Os.56959.1.S1_at11/114+27775810..27776728expressed protein
LOC_Os04g47140Os.51447.1.S1_s_at1/114+27775810..27776728expressed protein
LOC_Os04g47150Os.53925.1.A1_at11/114+27778105..27780866Subtilisin N-terminal Region family protein, expressed
LOC_Os04g47160OsAffx.14308.2.S1_at11/114+27782537..27784819Subtilisin N-terminal Region family protein, expressed
LOC_Os04g47160OsAffx.14308.1.S1_x_at1/114+27782537..27784819Subtilisin N-terminal Region family protein, expressed
LOC_Os04g47170OsAffx.26497.1.S1_at11/114+27794627..27796694pollen-specific kinase partner protein, putative, expressed
LOC_Os04g47180Os.5902.1.S2_at11/114+27796943..27802869expressed protein
LOC_Os04g47180Os.5902.1.S1_at11/114+27796943..27802869expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26496.1.S1_at--517--4471NONE
GCCTCCTCGAAGTTACAACTGCATC
NONE
OsAffx.26496.1.S1_at--687--2551Chr04:27772298..27772322 (25 bp)
AACTGCATCGCAGCATATTGCTGGA
LOC_Os04g47130
OsAffx.26496.1.S1_at--1024--2471Chr04:27772274..27772298 (25 bp)
AACACCAGTTGCGAAAGTTGACCAA
LOC_Os04g47130
OsAffx.26496.1.S1_at--619--10131Chr04:27772193..27772217 (25 bp)
TATGCCCATGGTGTTGAAGAGAATC
LOC_Os04g47130
OsAffx.26496.1.S1_at--997--5951Chr04:27772175..27772199 (25 bp)
GAGAATCGGTGAATCTATCGCAAAG
LOC_Os04g47130
OsAffx.26496.1.S1_at--156--5291Chr04:27772130..27772154 (25 bp)
GAATGTGAATATCCATCCCGTTTTC
LOC_Os04g47130
OsAffx.26496.1.S1_at--173--9071Chr04:27772051..27772075 (25 bp)
TGCATACCATCTGTAGCATTTTGAT
LOC_Os04g47130
OsAffx.26496.1.S1_at--289--7831Chr04:27772026..27772050 (25 bp)
GGTAAGTCTTTGTGTTGATTCAGCA
LOC_Os04g47130
OsAffx.26496.1.S1_at--955--6551Chr04:27772010..27772034 (25 bp)
GATTCAGCAGTATACCATTTGTAGC
LOC_Os04g47130
OsAffx.26496.1.S1_at--429--7651Chr04:27771916..27771940 (25 bp)
GGGAGTTTCTACTAACAAGACAGCT
LOC_Os04g47130
OsAffx.26496.1.S1_at--888--1391Chr04:27771899..27771923 (25 bp)
AGACAGCTTTAGTTAGGCGTGGCTT
LOC_Os04g47130
Target Sequence 
GCCTCCTCGAAGTTACAACTGCATCGCAGCATATTGCTGGAACACCAGTTGCGAAAGTTGACCAAGAGAAGAAGGAAAAA
CTAAGGATCGTCAAGGCCAAAAGTGAGGCGAATATTGGGGCTATGCCCATGGTGTTGAAGAGAATCGGTGAATCTATCGC
AAAGATCGAGAAGCTTGAGCATTTGAATGTGAATATCCATCCCGTTTTCAAAACTAAACGGTAGTGATGGACTGATGGTA
ACATGTTCTTGTATGATTCATTATGCATACCATCTGTAGCATTTTGATGGTAAGTCTTTGTGTTGATTCAGCAGTATACC
ATTTGTAGCATTTTGATGTTGGAATAGGCTGATTCAGCAGCATGTAGTTTGAAAAGGGATTCAACAGAAGTTTGTAGTGG
GAGTTTCTACTAACAAGACAGCTTTAGTTAGGCGTGGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26496.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis