Browse Element(s) Details


OsAffx.26506.1.S1_at

Description tigr:9632.m04602
TID=OsAffx.26506.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AL161587 putative protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4764011/11RWP-RK domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47600OsAffx.19542.3.S1_x_at3/114+28025944..28030166retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g47610OsAffx.4116.1.S1_x_at11/114+28041996..28042370hypothetical protein
LOC_Os04g47610OsAffx.4116.1.S1_at11/114+28041996..28042370hypothetical protein
LOC_Os04g47620OsAffx.29815.1.S1_x_at11/114+28043844..28046652Protein kinase APK1A, chloroplast precursor, putative, expressed
LOC_Os04g47630OsAffx.26505.1.S1_at11/114+28048432..28048922hypothetical protein
LOC_Os04g47640OsAffx.26506.1.S1_at11/114+28054429..28056732RWP-RK domain containing protein, expressed
LOC_Os04g47640Os.28979.1.S1_at1/114+28054429..28056732RWP-RK domain containing protein, expressed
LOC_Os04g47650OsAffx.26507.1.S1_x_at11/114+28059403..28059826expressed protein
LOC_Os04g47650OsAffx.11111.1.S1_x_at2/114+28059403..28059826expressed protein
LOC_Os04g47660NANA4+28061744..28063868retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g47670Os.28549.1.S1_at11/114+28064986..28066112expressed protein
LOC_Os04g47680OsAffx.14317.1.S1_at11/114+28068989..28072842Ser/Thr-rich protein T10 in DGCR region, putative, expressed
LOC_Os04g47680Os.51609.1.S1_at1/114+28068989..28072842Ser/Thr-rich protein T10 in DGCR region, putative, expressed
LOC_Os04g47690Os.46886.1.S1_at11/114+28074086..28077034HMG box family protein, expressed
LOC_Os04g47690Os.12612.1.S1_at11/114+28074086..28077034HMG box family protein, expressed
LOC_Os04g47700Os.16987.1.S1_at6/114+28077546..28085930expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26506.1.S1_at--145--1291Chr04:28055965..28055989 (25 bp)
AGATCCCCAAGCTCATGCAGTGTGA
LOC_Os04g47640
OsAffx.26506.1.S1_at--945--691Chr04:28055893..28055917 (25 bp)
ATGAGGTTCATGCATCAGAGTCTGA
LOC_Os04g47640
OsAffx.26506.1.S1_at--678--711Chr04:28055864..28055887 (24 bp)
ATGATGATCTCCAATCTGGTGAAGA
LOC_Os04g47640
OsAffx.26506.1.S1_at--1012--291Chr04:28054941..28054965 (25 bp)
ATAGCCAGCATTACTCTAGTTGACA
LOC_Os04g47640
OsAffx.26506.1.S1_at--1129--7011Chr04:28054909..28054933 (25 bp)
GTACTTCCATCTCCCAATCAGAGAA
LOC_Os04g47640
OsAffx.26506.1.S1_at--749--8991Chr04:28054871..28054895 (25 bp)
TGAAGATCGGAGTCAGCATACTGAA
LOC_Os04g47640
OsAffx.26506.1.S1_at--547--9171Chr04:28054839..28054863 (25 bp)
TGCCGGCAATATAACATACCCCGCT
LOC_Os04g47640
OsAffx.26506.1.S1_at--602--10791Chr04:28054790..28054814 (25 bp)
TTGATTCCCTCATTCAAGATCTTGA
LOC_Os04g47640
OsAffx.26506.1.S1_at--107--4051Chr04:28054562..28054586 (25 bp)
CGATCATGGCGCTCACAAGGCGGAA
LOC_Os04g47640
OsAffx.26506.1.S1_at--740--5811Chr04:28054525..28054549 (25 bp)
GACCGAGAAAGAGACCATCCAGCAG
LOC_Os04g47640
OsAffx.26506.1.S1_at--892--6571Chr04:28054501..28054525 (25 bp)
GATTCCTGCCATGGACCTGAAGGTA
LOC_Os04g47640
Target Sequence 
AGATCCCCAAGCTCATGCAGTGTGATTCGGAGGAGAAACTGAGCAGTTGGGATGCACGGGATAAAAGTTCTGATGAGGTT
CATGCATCAGAGTCTGATTCTGATGATGATCTCCAATCTGGTGAAGAAGAAAAGCCAACAGTTCAGAAGCAGCGGAGAGC
TAACAAGAAGCATATAGCCAGCATTACTCTAGTTGACATAGCTCAGTACTTCCATCTCCCAATCAGAGAAGCATCAAGGA
CTCTGAAGATCGGAGTCAGCATACTGAAGAGGAAATGCCGGCAATATAACATACCCCGCTGGCCTCACCGGAAGATCAAG
TCCCTTGATTCCCTCATTCAAGATCTTGAGTATGTGATTGATGATGGTGATGATCATGATGACACGGGAGATGATGTGCA
GCAGGAGAAGCACAAGCAGACGGCAGAGGAGAAGCAGGAGGCGATCATGGCGCTCACAAGGCGGAAGCAGATGCTGGAGA
CCGAGAAAGAGACCATCCAGCAGATTCCTGCCATGGACCTGAAGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26506.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis