Browse Element(s) Details


OsAffx.26511.1.S1_x_at

Description tigr:9632.m04634
TID=OsAffx.26511.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Spc97 Spc98 family
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4790611/11Gamma-tubulin complex component 6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47890Os.54093.1.S1_at11/114+28251283..28255169myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os04g47900Os.55683.1.S1_at11/114+28260402..28261253expressed protein
LOC_Os04g47906OsAffx.26511.1.S1_x_at11/114+28264945..28269568Gamma-tubulin complex component 6, putative, expressed
LOC_Os04g47906OsAffx.26511.1.S1_at11/114+28264945..28269568Gamma-tubulin complex component 6, putative, expressed
LOC_Os04g47906Os.51033.1.S1_at10/114+28264945..28269568Gamma-tubulin complex component 6, putative, expressed
LOC_Os04g47912Os.53375.1.S1_at11/114+28270308..28275324expressed protein
LOC_Os04g47920OsAffx.4118.1.S1_at11/114+28278967..28279242hypothetical protein
LOC_Os04g47930Os.56757.1.S1_at9/114+28280903..28283389Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os04g47940NANA4+28287793..28288194transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0015631molecular_functiontubulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26511.1.S1_x_at--712--9751Chr04:28268946..28268970 (25 bp)
TAATCAGTCGTTCCAGCCATAATAG
LOC_Os04g47906
OsAffx.26511.1.S1_x_at--201--2351Chr04:28266967..28266991 (25 bp)
AAAGCACTACCATAGCATTGTAATA
LOC_Os04g47906
OsAffx.26511.1.S1_x_at--140--3271Chr04:28266832..28266854 (23 bp)
CAAACCAACTTTTCTGTTGCCTGAC
LOC_Os04g47906
OsAffx.26511.1.S1_x_at--406--10391Chr04:28266701..28266845 (25 bp)
TTTTCTGTTGCCTGACATCAAGTTT
LOC_Os04g47906
OsAffx.26511.1.S1_x_at--922--1191Chr04:28266652..28266676 (25 bp)
AGTATCTCCATTGCCATTTGTCTGA
LOC_Os04g47906
OsAffx.26511.1.S1_x_at--1128--7171Chr04:28266633..28266657 (25 bp)
GTCTGATATATCATGGCGCCGTTTT
LOC_Os04g47906
OsAffx.26511.1.S1_x_at--1074--4491Chr04:28266616..28266640 (25 bp)
GCCGTTTTCAACATTCACTTCAACA
LOC_Os04g47906
OsAffx.26511.1.S1_x_at--186--2211Chr04:28266216..28266240 (25 bp)
ACAAGCTTTGGAGTTGCGGTCATGT
LOC_Os04g47906
OsAffx.26511.1.S1_x_at--1027--4671Chr04:28266201..28266225 (25 bp)
GCGGTCATGTTTTAAGAGCCTCAAT
LOC_Os04g47906
OsAffx.26511.1.S1_x_at--285--3131Chr04:28265644..28266152 (25 bp)
AATTTCTCTCAGGTGGACGCTATTA
LOC_Os04g47906
OsAffx.26511.1.S1_x_at--424--6051Chr04:28265554..28265578 (25 bp)
GAGATTGGTCTTTATCGTTTCTGGG
LOC_Os04g47906
Target Sequence 
TAATCAGTCGTTCCAGCCATAATAGACCTGATGTTTTAAAGGAATTGAGTTCTGTGATGAAACTGAGATATGAAATTAAG
AAGTGCATATTTTTTGTCAAAAAGCACTACCATAGCATTGTAATATCACTAGGTTTTGTAGATATTAACAAACCAACTTT
TCTGTTGCCTGACATCAAGTTTATCACTTTCTATCAACACTACAACAGTATCTCCATTGCCATTTGTCTGATATATCATG
GCGCCGTTTTCAACATTCACTTCAACATCAGATGTTTCTTATCTGCTGAAACAAAACCAATTGCTGCCATAATTAATAGC
ATTCTACAACAAGCTTTGGAGTTGCGGTCATGTTTTAAGAGCCTCAATTACATTTCTGAGTCAACAGTAAAACAACTTAA
TCTGGATTCTCTTATAAATTTCTCTCAGGTGGACGCTATTAGAACGAAGTTTGAGGGTAATATCAAAGATTTGTATATTT
TGCATTTGAAGTCTTCGAAATATGGGGAGATTGGTCTTTATCGTTTCTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26511.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis