Browse Element(s) Details


OsAffx.26545.1.S1_s_at

Description tigr:9632.m04860
TID=OsAffx.26545.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5003011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49970Os.53025.1.S1_at11/114+29590137..29591723U-box domain containing protein, expressed
LOC_Os04g49980Os.6618.1.S1_at11/114+29592878..29593643Late embryogenesis abundant group 1 family protein, expressed
LOC_Os04g49990Os.11431.1.S1_at11/114+29594959..29599053AT hook motif family protein, expressed
LOC_Os04g49990Os.11431.2.S1_at11/114+29594959..29599053AT hook motif family protein, expressed
LOC_Os04g50000NANA4+29599643..29603998retrotransposon protein, putative, unclassified
LOC_Os04g50010NANA4+29604457..29604672hypothetical protein
LOC_Os04g50020OsAffx.4133.1.S1_at11/114+29608778..29609834heavy metal-associated domain containing protein, expressed
LOC_Os04g50030OsAffx.26545.1.S1_s_at11/114+29612152..29613524expressed protein
LOC_Os04g50040NANA4+29630755..29631805hypothetical protein
LOC_Os04g50050OsAffx.23502.2.S1_at5/114+29632775..29635801hypothetical protein
LOC_Os04g50060Os.7058.1.S1_at11/114+29638486..29641230GRAS family transcription factor containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26545.1.S1_s_at--140--3371Chr04:29612496..29612520 (25 bp)
CACCGTTCTGACATGCGCATACATG
LOC_Os04g50030
OsAffx.26545.1.S1_s_at--505--611Chr04:29612484..29612508 (25 bp)
ATGCGCATACATGGGTGTAGCTCCG
LOC_Os04g50030
OsAffx.26545.1.S1_s_at--286--9871Chr04:29612477..29612501 (25 bp)
TACATGGGTGTAGCTCCGGCGAAAG
LOC_Os04g50030
OsAffx.26545.1.S1_s_at--641--10531Chr04:29612398..29612422 (25 bp)
TTCATGGCCGCAGCTTGCAAAAGGT
LOC_Os04g50030
OsAffx.26545.1.S1_s_at--549--10651Chr04:29612384..29612408 (25 bp)
TTGCAAAAGGTTAGCGAACGCACGC
LOC_Os04g50030
OsAffx.26545.1.S1_s_at--890--4091Chr04:29612370..29612394 (25 bp)
CGAACGCACGCATGAACCACGTATT
LOC_Os04g50030
OsAffx.26545.1.S1_s_at--79--1071Chr04:29612344..29612368 (25 bp)
AGGGTTACCACCGATCGATCTATAT
LOC_Os04g50030
OsAffx.26545.1.S1_s_at--415--9391Chr04:29612330..29612354 (25 bp)
TCGATCTATATCTACTGCTCTATTT
LOC_Os04g50030
OsAffx.26545.1.S1_s_at--463--3731Chr04:29612319..29612343 (25 bp)
CTACTGCTCTATTTCTATCTCTATG
LOC_Os04g50030
OsAffx.26545.1.S1_s_at--494--4031Chr04:29612283..29612307 (25 bp)
CGTAGTGTTTGCTCGATCTCTGATT
LOC_Os04g50030
OsAffx.26545.1.S1_s_at--5--10571Chr04:29612212..29612236 (25 bp)
TTCTTTTGAACCTTAATTTGTGGTG
LOC_Os04g50030
Target Sequence 
CACCGTTCTGACATGCGCATACATGGGTGTAGCTCCGGCGAAAGGAGAGGAGATGAGAGGAGAGATCACAAGAAGCAAAG
GAAAGGACATCGCAAGGGTTCATGGCCGCAGCTTGCAAAAGGTTAGCGAACGCACGCATGAACCACGTATTCAGGGTTAC
CACCGATCGATCTATATCTACTGCTCTATTTCTATCTCTATGTACAATTATTTCGTAGTGTTTGCTCGATCTCTGATTAT
GTGTTTTCGTTATTGTTCTTTTTTTCCCCTTTTTCTTTTATTGTTTCTTTTGAACCTTAATTTGTGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26545.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis