Browse Element(s) Details


OsAffx.26557.1.S1_at

Description tigr:9632.m04920
TID=OsAffx.26557.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5098011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g50940Os.52974.1.S1_at11/114+29937166..29940108POT family protein, expressed
LOC_Os04g50950Os.11322.1.S1_at11/114+29942366..29946429POT family protein, expressed
LOC_Os04g50960OsAffx.4142.1.S1_at11/114+29948266..29952818expressed protein
LOC_Os04g50970Os.12352.1.S1_at9/114+29953038..29955123seed specific protein Bn15D1B, putative, expressed
LOC_Os04g50980OsAffx.26557.1.S1_at11/114+29958147..29958647hypothetical protein
LOC_Os04g50990Os.9459.1.S1_at11/114+29961245..2996291460S ribosomal protein L12, putative, expressed
LOC_Os04g51000Os.57558.1.S1_at11/114+29963504..29966768Transcription factor FL, putative, expressed
LOC_Os04g51010OsAffx.21248.1.S1_x_at1/114+29977119..29981147Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26557.1.S1_at--652--10111Chr04:29958552..29958608 (25 bp)
TATGACACATGCTGCCGAGACGCAT
LOC_Os04g50980
OsAffx.26557.1.S1_at--37--431Chr04:29958529..29958553 (25 bp)
ATCATCGTCTGCGTCTGGTGCCGTG
LOC_Os04g50980
OsAffx.26557.1.S1_at--365--8611Chr04:29958514..29958538 (25 bp)
TGGTGCCGTGCCTATGTGCATCATC
LOC_Os04g50980
OsAffx.26557.1.S1_at--328--7331Chr04:29958499..29958523 (25 bp)
GTGCATCATCTTCAAGGCTTCAACC
LOC_Os04g50980
OsAffx.26557.1.S1_at--868--5091Chr04:29958389..29958489 (25 bp)
GCACACGCACGCAAAGGTACCAGTA
LOC_Os04g50980
OsAffx.26557.1.S1_at--69--2911Chr04:29958376..29958399 (24 bp)
AAGGTACCAGTAACGCTCCGCCAGT
LOC_Os04g50980
OsAffx.26557.1.S1_at--4--1131Chr04:29958354..29958378 (25 bp)
AGTGCGAATTCCCAACGACCAATCG
LOC_Os04g50980
OsAffx.26557.1.S1_at--853--2591Chr04:29958341..29958365 (25 bp)
AACGACCAATCGGTTGCGGCAGATA
LOC_Os04g50980
OsAffx.26557.1.S1_at--775--8931Chr04:29958313..29958337 (25 bp)
TGACGCCACCTATCGGGAGAAACTT
LOC_Os04g50980
OsAffx.26557.1.S1_at--672--4451Chr04:29958256..29958280 (25 bp)
GCCTCTTCCTCGTAGTCGTAGACAT
LOC_Os04g50980
OsAffx.26557.1.S1_at--442--8171Chr04:29958195..29958219 (25 bp)
GGAATTCTGGAAACTCCGGTCCATG
LOC_Os04g50980
Target Sequence
TATGACACATGCTGCCGAGACGCATCATCGTCTGCGTCTGGTGCCGTGCCTATGTGCATCATCTTCAAGGCTTCAACCGT
GCGCGGCGCACACGCACGCAAAGGTACCAGTAACGCTCCGCCAGTGCGAATTCCCAACGACCAATCGGTTGCGGCAGATA
GCCTGACGCCACCTATCGGGAGAAACTTGCACTGGCAAGCCAACGCCTTTGCTCTTTTCGGCCTCTTCCTCGTAGTCGTA
GACATGGGAGGGGACAAATTTGAGAGATGTTTGAAAATTCTGGAATTCTGGAAACTCCGGTCCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26557.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis