Browse Element(s) Details


OsAffx.26576.1.S1_at

Description tigr:9632.m05102
TID=OsAffx.26576.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5265010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52614OsAffx.4157.1.S1_at11/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52614OsAffx.4157.1.S1_x_at11/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52614Os.27242.1.S1_x_at11/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52614Os.27242.1.S1_at11/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52614Os.53743.1.S1_at10/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52614Os.54061.1.S1_x_at10/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52614Os.27084.2.S1_at1/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52614Os.27084.2.S1_x_at1/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52614Os.17112.1.S1_at1/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52630Os.52059.1.S1_at11/114+31089687..31091174Protein kinase domain containing protein, expressed
LOC_Os04g52630Os.27084.2.S1_at1/114+31089687..31091174Protein kinase domain containing protein, expressed
LOC_Os04g52630OsAffx.4157.1.S1_x_at1/114+31089687..31091174Protein kinase domain containing protein, expressed
LOC_Os04g52630Os.27084.2.S1_x_at1/114+31089687..31091174Protein kinase domain containing protein, expressed
LOC_Os04g52640Os.27084.2.S1_a_at11/114+31098527..31108979SHR5-receptor-like kinase, putative, expressed
LOC_Os04g52640Os.27084.1.A1_a_at11/114+31098527..31108979SHR5-receptor-like kinase, putative, expressed
LOC_Os04g52640Os.27084.2.S1_at11/114+31098527..31108979SHR5-receptor-like kinase, putative, expressed
LOC_Os04g52640Os.27084.2.S1_x_at11/114+31098527..31108979SHR5-receptor-like kinase, putative, expressed
LOC_Os04g52640Os.27084.1.A2_at10/114+31098527..31108979SHR5-receptor-like kinase, putative, expressed
LOC_Os04g52640Os.47793.1.A1_at6/114+31098527..31108979SHR5-receptor-like kinase, putative, expressed
LOC_Os04g52650Os.7420.1.S1_s_at11/114+31110670..31112273expressed protein
LOC_Os04g52650OsAffx.26576.1.S1_at10/114+31110670..31112273expressed protein
LOC_Os04g52660Os.27304.1.A1_at11/114+31121219..31125663expressed protein
LOC_Os04g52670OsAffx.14380.1.S1_s_at11/114+31130595..31131661Auxin responsive protein, expressed
LOC_Os04g52680OsAffx.26577.1.S1_at4/114+31135177..31136141hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26576.1.S1_at--1090--731Chr04:31111287..31111311 (25 bp)
ATGTTTCTGTTGAAGTGCCGTGCTG
LOC_Os04g52650
OsAffx.26576.1.S1_at--656--7271Chr04:31111301..31111325 (25 bp)
GTGCCGTGCTGGAGTGTTTACTGAA
LOC_Os04g52650
OsAffx.26576.1.S1_at--159--1111Chr04:31111313..31111337 (25 bp)
AGTGTTTACTGAAAATGTCGAGATC
LOC_Os04g52650
OsAffx.26576.1.S1_at--441--6031Chr04:31111332..31111356 (25 bp)
GAGATCAAGATCAGCCGGACGAGTG
LOC_Os04g52650
OsAffx.26576.1.S1_at--972--391Chr04:31111341..31111365 (25 bp)
ATCAGCCGGACGAGTGACAGGATCA
LOC_Os04g52650
OsAffx.26576.1.S1_at--47--3491Chr04:31111358..31111382 (25 bp)
CAGGATCACCAAGCGTGCGCGTGAA
LOC_Os04g52650
OsAffx.26576.1.S1_at--380--5551Chr04:31111380..31111404 (25 bp)
GAAACGACGACGAACGCGCTGGAAT
LOC_Os04g52650
OsAffx.26576.1.S1_at--41--2611Chr04:31111392..31111416 (25 bp)
AACGCGCTGGAATCCGAATTTCCTG
LOC_Os04g52650
OsAffx.26576.1.S1_at--201--4531Chr04:31111419..31111598 (25 bp)
GCCGCTGTCGCGTTTAAGTGTATCA
LOC_Os04g52650
OsAffx.26576.1.S1_at--315--3871Chr04:31111423..31111602 (25 bp)
CTGTCGCGTTTAAGTGTATCACCAA
LOC_Os04g52650
OsAffx.26576.1.S1_at--748--2011NONE
ACTAGGGACAACACTGCTGGGAAAT
NONE
Target Sequence 
ATGTTTCTGTTGAAGTGCCGTGCTGGAGTGTTTACTGAAAATGTCGAGATCAAGATCAGCCGGACGAGTGACAGGATCAC
CAAGCGTGCGCGTGAAACGACGACGAACGCGCTGGAATCCGAATTTCCTGCCGCCGCTGTCGCGTTTAAGTGTATCACCA
AAGAGGCTGAGCTGATGTGCGCAATGCTGATTCATGCGGCGGAAGATCACCCCTACTGGTTTGTATTGTGCAACAAAGTC
CGGCTGTATGCCTTAAGATTTATGGCCTACAAAGAGCCTGAATATATTCTTGCCGCAGCCGCCATGATGGGCATCACGCG
AGAAGCCAACTTGACGTGTGAGTTGGTGAAGGAAAGGCACAAGGATAAAAATGGACGCGAGTTCTTCAGCATCTTTATCC
GGACTAGGACCTTGGCATCTATGTACTACATACTCAAAGAATATTCTGCTGTGGGAAAGCCTACTAGGGACAACACTGCT
GGGAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26576.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis