Browse Element(s) Details


OsAffx.26579.1.S1_at

Description tigr:9632.m05117
TID=OsAffx.26579.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5279011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52740NANA4+31188422..31188835expressed protein
LOC_Os04g52750Os.55408.1.S1_at11/114+31191452..31191913expressed protein
LOC_Os04g52760Os.19792.1.S1_at11/114+31193087..31195539Gamma-soluble NSF attachment protein, putative, expressed
LOC_Os04g52770Os.4548.1.S1_at11/114+31197320..31201037Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g52770Os.5217.1.S1_at7/114+31197320..31201037Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g52780Os.50342.1.S1_at11/114+31201743..31206034Leucine Rich Repeat family protein, expressed
LOC_Os04g52790OsAffx.26579.1.S1_at11/114+31213376..31213894hypothetical protein
LOC_Os04g52800OsAffx.14383.1.S1_at11/114+31215878..31216897hypothetical protein
LOC_Os04g52810OsAffx.4160.1.S1_at11/114+31220876..31224278No apical meristem protein, expressed
LOC_Os04g52820OsAffx.26580.1.S1_at11/114+31229488..31233456hypothetical protein
LOC_Os04g52820Os.57094.1.S1_at11/114+31229488..31233456hypothetical protein
LOC_Os04g52820Os.51708.1.S1_at10/114+31229488..31233456hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26579.1.S1_at--325--5691Chr04:31213840..31213864 (25 bp)
GACTTCTTCCTGGTACCTGATAGCC
LOC_Os04g52790
OsAffx.26579.1.S1_at--493--10551Chr04:31213837..31213861 (25 bp)
TTCTTCCTGGTACCTGATAGCCTAG
LOC_Os04g52790
OsAffx.26579.1.S1_at--529--10651Chr04:31213834..31213858 (25 bp)
TTCCTGGTACCTGATAGCCTAGTAT
LOC_Os04g52790
OsAffx.26579.1.S1_at--325--9991Chr04:31213820..31213844 (25 bp)
TAGCCTAGTATCAAGCTGTTACCTA
LOC_Os04g52790
OsAffx.26579.1.S1_at--957--6891Chr04:31213813..31213837 (25 bp)
GTATCAAGCTGTTACCTAGGCATCT
LOC_Os04g52790
OsAffx.26579.1.S1_at--999--9711Chr04:31213810..31213834 (25 bp)
TCAAGCTGTTACCTAGGCATCTCGG
LOC_Os04g52790
OsAffx.26579.1.S1_at--1033--1591Chr04:31213807..31213831 (25 bp)
AGCTGTTACCTAGGCATCTCGGCTT
LOC_Os04g52790
OsAffx.26579.1.S1_at--305--1751Chr04:31213800..31213824 (25 bp)
ACCTAGGCATCTCGGCTTCGCTTGA
LOC_Os04g52790
OsAffx.26579.1.S1_at--290--3351Chr04:31213708..31213732 (25 bp)
CACGTGGTGGTGTGGCACCTAGACC
LOC_Os04g52790
OsAffx.26579.1.S1_at--149--8671Chr04:31213698..31213722 (25 bp)
TGTGGCACCTAGACCACACCTTCGA
LOC_Os04g52790
OsAffx.26579.1.S1_at--657--4651Chr04:31213420..31213444 (25 bp)
GCGGCCGTTGGCTCCGGCAATCGGT
LOC_Os04g52790
Target Sequence 
GACTTCTTCCTGGTACCTGATAGCCTAGTATCAAGCTGTTACCTAGGCATCTCGGCTTCGCTTGAGGCGGAGAGACACCA
CCGCCGACCGCAGCGGCTGCTGCTTGCATGGGGCAAGACCACGGCGGCGCAGCACGTGGTGGTGTGGCACCTAGACCACA
CCTTCGAGAAGCTCGCGTCGGCGCACCTCCCGCTCGTGGCGGCGGCACCGCTGGTGGACGCGCTGCGTGCGTCGCCCGCC
AAGCCACTCGCGCTCTTCGACCTCGCCCGCCGCCTCCCGCTCCGGCTCCATCGGCGAGGCGCGCTCTACTTCCTCCACCT
CTCCCCTCGCATGTTCGGCCTCCGCGCCCCGCTCCCGCTCTCCCTCTCGCTCACCGCGCCCGCCACCGAGCTCCTCGCCG
TTGCCGCTTCCCCCACAGCGGCGGCCGTTGGCTCCGGCAATCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26579.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis