Browse Element(s) Details


OsAffx.26580.1.S1_at

Description tigr:9632.m05120
TID=OsAffx.26580.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5282011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52780Os.50342.1.S1_at11/114+31201743..31206034Leucine Rich Repeat family protein, expressed
LOC_Os04g52790OsAffx.26579.1.S1_at11/114+31213376..31213894hypothetical protein
LOC_Os04g52800OsAffx.14383.1.S1_at11/114+31215878..31216897hypothetical protein
LOC_Os04g52810OsAffx.4160.1.S1_at11/114+31220876..31224278No apical meristem protein, expressed
LOC_Os04g52820OsAffx.26580.1.S1_at11/114+31229488..31233456hypothetical protein
LOC_Os04g52820Os.57094.1.S1_at11/114+31229488..31233456hypothetical protein
LOC_Os04g52820Os.51708.1.S1_at10/114+31229488..31233456hypothetical protein
LOC_Os04g52830Os.4693.1.S1_at11/114+31239893..31242955kelch repeat-containing F-box family protein, putative, expressed
LOC_Os04g52830OsAffx.18753.3.S1_x_at1/114+31239893..31242955kelch repeat-containing F-box family protein, putative, expressed
LOC_Os04g52840Os.4555.1.S1_at11/114+31244047..31247345Protein kinase domain containing protein, expressed
LOC_Os04g52850Os.19751.1.S1_at11/114+31255319..31258257OTU-like cysteine protease family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26580.1.S1_at--884--7311Chr04:31231966..31232322 (25 bp)
GTGCTCAATGCATCAAATGGTGCTT
LOC_Os04g52820
OsAffx.26580.1.S1_at--878--2971Chr04:31232313..31232337 (25 bp)
AATGGTGCTTATCCTGACCTCCTAT
LOC_Os04g52820
OsAffx.26580.1.S1_at--59--7731Chr04:31232958..31232982 (25 bp)
GGTGGCTATGATATTCCATGTTCCA
LOC_Os04g52820
OsAffx.26580.1.S1_at--594--4331Chr04:31232973..31232997 (25 bp)
CCATGTTCCATTACGCAATTACTTT
LOC_Os04g52820
OsAffx.26580.1.S1_at--24--3591Chr04:31232999..31233023 (25 bp)
CATTTGGTAATGTGTGCCTCGTACA
LOC_Os04g52820
OsAffx.26580.1.S1_at--308--7471Chr04:31233010..31233034 (25 bp)
GTGTGCCTCGTACAGATATACTCCA
LOC_Os04g52820
OsAffx.26580.1.S1_at--258--7031Chr04:31233019..31233043 (25 bp)
GTACAGATATACTCCAACTTGCCAT
LOC_Os04g52820
OsAffx.26580.1.S1_at--271--2511Chr04:31233034..31233058 (25 bp)
AACTTGCCATATTCAGAAACCTGTT
LOC_Os04g52820
OsAffx.26580.1.S1_at--514--5551Chr04:31233049..31233073 (25 bp)
GAAACCTGTTACTCAGCATTTCTTT
LOC_Os04g52820
OsAffx.26580.1.S1_at--423--4951Chr04:31233064..31233088 (25 bp)
GCATTTCTTTGCCAGGTCGAGCACT
LOC_Os04g52820
OsAffx.26580.1.S1_at--979--1831Chr04:31233401..31233425 (25 bp)
ACGAAATCGCAGAGCCTGAACCAAT
LOC_Os04g52820
Target Sequence 
GTGCTCAATGCATCAAATGGTGCTTATCCTGACCTCCTATGTCCTTTTTTCTTATATGGTACAGACGGAGGCATTTGTCA
CCAAGCTAGCAAGTGACGCCAACGCCAGTGGCCTCTCTGTGGTGGAGAAAGAGCATCCTAGGAGTCTGACGCCCATGCTA
TGGGCCAAAAAGGTGGCTATGATATTCCATGTTCCATTACGCAATTACTTTACATTTGGTAATGTGTGCCTCGTACAGAT
ATACTCCAACTTGCCATATTCAGAAACCTGTTACTCAGCATTTCTTTGCCAGGTCGAGCACTTTTCCGAACATCAAACGA
AGCGCCCATGCTGGGAGCAATGCCTCCGCCACCTTCAAAGGGACCGAAGAACTGAACCTGCAGTGGACTTAACTGTTTGG
AGCAGATTTCGAGCCCTCACCGACAGCAACGACAGGGCCAGGTACCAACGGCACATGACATGTGGTGAAAACTTCAGTGA
CCAGCGGTACTTGCCCATGCATATGCTCTCCCACGAAATCGCAGAGCCTGAACCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26580.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis