Browse Element(s) Details


OsAffx.26583.1.S1_at

Description tigr:9632.m05137
TID=OsAffx.26583.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5298011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52940Os.52314.1.S2_x_at11/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os04g52940Os.52314.1.S1_at11/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os04g52940Os.8784.1.S1_at11/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os04g52940Os.52314.1.S2_at9/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os04g52940Os.38157.1.S1_s_at1/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os04g52950Os.50496.1.S1_at11/114+31322937..31323695Nitrate-induced NOI protein, expressed
LOC_Os04g52960Os.23208.1.S1_at11/114+31325067..31332146RNA recognition motif family protein, expressed
LOC_Os04g52960Os.27035.2.S1_s_at1/114+31325067..31332146RNA recognition motif family protein, expressed
LOC_Os04g52970Os.22807.1.S1_s_at11/114+31334008..31339348NB-ARC domain containing protein, expressed
LOC_Os04g52970Os.18578.1.S1_s_at11/114+31334008..31339348NB-ARC domain containing protein, expressed
LOC_Os04g52970OsAffx.14387.1.S1_at11/114+31334008..31339348NB-ARC domain containing protein, expressed
LOC_Os04g52980OsAffx.26583.1.S1_at11/114+31340744..31341013expressed protein
LOC_Os04g52990Os.51611.1.S1_at11/114+31343331..31343904expressed protein
LOC_Os04g53000OsAffx.14387.3.S1_at11/114+31346084..31347211Leucine Rich Repeat family protein, expressed
LOC_Os04g53010Os.14919.1.S1_at4/114+31350225..31356143Transposable element protein, putative, MuDR
LOC_Os04g53010OsAffx.29313.1.S1_at1/114+31350225..31356143Transposable element protein, putative, MuDR
LOC_Os04g53020NANA4+31356564..31357381GRF zinc finger family protein
LOC_Os04g53030OsAffx.14389.1.S1_at11/114+31358821..31364811NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26583.1.S1_at--531--1291Chr04:31340776..31340800 (25 bp)
AGATCCGGAGATGACGGTGCCCCCT
LOC_Os04g52980
OsAffx.26583.1.S1_at--785--7271Chr04:31340792..31340816 (25 bp)
GTGCCCCCTCCATATGTTCGAGGAA
LOC_Os04g52980
OsAffx.26583.1.S1_at--1083--6691Chr04:31340807..31340831 (25 bp)
GTTCGAGGAAATGCCTGGCCGATAC
LOC_Os04g52980
OsAffx.26583.1.S1_at--895--6171Chr04:31340811..31340835 (25 bp)
GAGGAAATGCCTGGCCGATACCGTT
LOC_Os04g52980
OsAffx.26583.1.S1_at--1076--2271Chr04:31340815..31340839 (25 bp)
AAATGCCTGGCCGATACCGTTCAAG
LOC_Os04g52980
OsAffx.26583.1.S1_at--313--591Chr04:31340817..31340841 (25 bp)
ATGCCTGGCCGATACCGTTCAAGCA
LOC_Os04g52980
OsAffx.26583.1.S1_at--577--4471Chr04:31340819..31340843 (25 bp)
GCCTGGCCGATACCGTTCAAGCAGA
LOC_Os04g52980
OsAffx.26583.1.S1_at--151--8471Chr04:31340822..31340846 (25 bp)
TGGCCGATACCGTTCAAGCAGAGTG
LOC_Os04g52980
OsAffx.26583.1.S1_at--1142--4491Chr04:31340824..31340848 (25 bp)
GCCGATACCGTTCAAGCAGAGTGCT
LOC_Os04g52980
OsAffx.26583.1.S1_at--970--4231Chr04:31340825..31340849 (25 bp)
CCGATACCGTTCAAGCAGAGTGCTG
LOC_Os04g52980
OsAffx.26583.1.S1_at--286--6491Chr04:31340827..31340851 (25 bp)
GATACCGTTCAAGCAGAGTGCTGGT
LOC_Os04g52980
Target Sequence 
AGATCCGGAGATGACGGTGCCCCCTCCATATGTTCGAGGAAATGCCTGGCCGATACCGTTCAAGCAGAGTGCTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26583.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis