Browse Element(s) Details


OsAffx.26588.1.S1_at

Description tigr:9632.m05163
TID=OsAffx.26588.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AY088888 glycolate oxidase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g532206/11Signal recognition particle 14 kDa protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53190Os.15210.2.S1_x_at11/114+31450157..31455532FAD binding domain containing protein, expressed
LOC_Os04g53200Os.10836.1.S1_a_at11/114+31459864..31464830exonuclease family protein, expressed
LOC_Os04g53200Os.10836.1.S1_at11/114+31459864..31464830exonuclease family protein, expressed
LOC_Os04g53200Os.10836.2.S1_at10/114+31459864..31464830exonuclease family protein, expressed
LOC_Os04g53210Os.6585.1.S1_at11/114+31469654..31473439expressed protein
LOC_Os04g53210Os.42814.1.S1_x_at1/114+31469654..31473439expressed protein
LOC_Os04g53220Os.4147.1.S1_at11/114+31478225..31481224Signal recognition particle 14 kDa protein, putative, expressed
LOC_Os04g53220OsAffx.26588.1.S1_x_at8/114+31478225..31481224Signal recognition particle 14 kDa protein, putative, expressed
LOC_Os04g53220OsAffx.26588.1.S1_at6/114+31478225..31481224Signal recognition particle 14 kDa protein, putative, expressed
LOC_Os04g53230Os.20702.1.S1_at11/114+31481897..31484526Aminomethyltransferase, mitochondrial precursor, putative, expressed
LOC_Os04g53240Os.14109.1.S1_at8/114+31497308..31500105Autophagy-related protein 8 precursor, putative, expressed
LOC_Os04g53250OsAffx.14394.1.S1_at10/114+31502654..31504041hypothetical protein
LOC_Os04g53250Os.55517.1.S1_x_at1/114+31502654..31504041hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006605biological_processprotein targeting
GO:0005786cellular_componentsignal recognition particle (sensu Eukaryota)
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26588.1.S1_at--1124--4231Chr04:31477230..31477612 (25 bp)
CCGTTGTTCTCGGCTATGGAGATGG
NONE
OsAffx.26588.1.S1_at--1042--10011Chr04:31477624..31477648 (25 bp)
TAGAAACTTAGTACAATCAGGCATG
NONE
OsAffx.26588.1.S1_at--811--2511Chr04:31477628..31477652 (25 bp)
AACTTAGTACAATCAGGCATGTGGA
NONE
OsAffx.26588.1.S1_at--244--3671Chr04:31477630..31477654 (25 bp)
CTTAGTACAATCAGGCATGTGGAGA
NONE
OsAffx.26588.1.S1_at--330--9851Chr04:31477635..31477659 (25 bp)
TACAATCAGGCATGTGGAGAATGGT
NONE
OsAffx.26588.1.S1_at--659--1791Chr04:31480183..31480202 (20 bp)
ACCGCGGGGTCGATAGTGCAATTAC
LOC_Os04g53220
OsAffx.26588.1.S1_at--1147--6491Chr04:31480189..31480210 (22 bp)
GATAGTGCAATTACGAGCTGAGCTC
LOC_Os04g53220
OsAffx.26588.1.S1_at--712--10071Chr04:31480191..31480531 (25 bp)
TAGTGCAATTACGAGCTGAGCTCTC
LOC_Os04g53220
OsAffx.26588.1.S1_at--875--5191Chr04:31480195..31480535 (25 bp)
GCAATTACGAGCTGAGCTCTCTGCA
LOC_Os04g53220
OsAffx.26588.1.S1_at--1162--3131Chr04:31480197..31480537 (25 bp)
AATTACGAGCTGAGCTCTCTGCAAA
LOC_Os04g53220
OsAffx.26588.1.S1_at--90--9951Chr04:31480200..31480540 (25 bp)
TACGAGCTGAGCTCTCTGCAAAGGA
LOC_Os04g53220
Target Sequence 
CCGTTGTTCTCGGCTATGGAGATGGTTGTGTTTTTTTAGAAACTTAGTACAATCAGGCATGTGGAGAATGGTGGTGCTGC
AACCAGATCCGTTTCTGAGCGAGTTGACGAGCATGTACGAGCGGAGCACGGAGAAGGGATCTGTCTGGGTCACCATGAAG
CGATCATCGATGAAGTGCCAGGCAAGGTTGAAGAAGATGGCGGCGAAGGGAGAGGCAGTGGAGTACCGGTGCCTCGTCCG
TGCCACCGATGGCAAGAAGAACATCTGCACCGCGGGGTCGATAGTGCAATTACGAGCTGAGCTCTCTGCAAAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26588.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis