Browse Element(s) Details


OsAffx.26588.1.S1_x_at

Description tigr:9632.m05163
TID=OsAffx.26588.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AY088888 glycolate oxidase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g532208/11Signal recognition particle 14 kDa protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53190Os.15210.2.S1_x_at11/114+31450157..31455532FAD binding domain containing protein, expressed
LOC_Os04g53200Os.10836.1.S1_a_at11/114+31459864..31464830exonuclease family protein, expressed
LOC_Os04g53200Os.10836.1.S1_at11/114+31459864..31464830exonuclease family protein, expressed
LOC_Os04g53200Os.10836.2.S1_at10/114+31459864..31464830exonuclease family protein, expressed
LOC_Os04g53210Os.6585.1.S1_at11/114+31469654..31473439expressed protein
LOC_Os04g53210Os.42814.1.S1_x_at1/114+31469654..31473439expressed protein
LOC_Os04g53220Os.4147.1.S1_at11/114+31478225..31481224Signal recognition particle 14 kDa protein, putative, expressed
LOC_Os04g53220OsAffx.26588.1.S1_x_at8/114+31478225..31481224Signal recognition particle 14 kDa protein, putative, expressed
LOC_Os04g53220OsAffx.26588.1.S1_at6/114+31478225..31481224Signal recognition particle 14 kDa protein, putative, expressed
LOC_Os04g53230Os.20702.1.S1_at11/114+31481897..31484526Aminomethyltransferase, mitochondrial precursor, putative, expressed
LOC_Os04g53240Os.14109.1.S1_at8/114+31497308..31500105Autophagy-related protein 8 precursor, putative, expressed
LOC_Os04g53250OsAffx.14394.1.S1_at10/114+31502654..31504041hypothetical protein
LOC_Os04g53250Os.55517.1.S1_x_at1/114+31502654..31504041hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006605biological_processprotein targeting
GO:0005786cellular_componentsignal recognition particle (sensu Eukaryota)
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26588.1.S1_x_at--812--1611Chr04:31477142..31477166 (25 bp)
AGCTGGAGATCACCATGGCGCTCAG
NONE
OsAffx.26588.1.S1_x_at--700--1371Chr04:31477214..31477238 (25 bp)
AGAGCGACAGGATCCGCCGTTGTTC
NONE
OsAffx.26588.1.S1_x_at--109--5551Chr04:31477626..31477650 (25 bp)
GAAACTTAGTACAATCAGGCATGTG
NONE
OsAffx.26588.1.S1_x_at--675--811Chr04:31478620..31478642 (23 bp)
ATGGTGGTGCTGCAACCAGATCCGT
LOC_Os04g53220
OsAffx.26588.1.S1_x_at--735--6371Chr04:31478636..31478660 (25 bp)
GATCCGTTTCTGAGCGAGTTGACGA
LOC_Os04g53220
OsAffx.26588.1.S1_x_at--1102--1451Chr04:31478682..31478706 (25 bp)
AGAAGGGATCTGTCTGGGTCACCAT
LOC_Os04g53220
OsAffx.26588.1.S1_x_at--535--7691Chr04:31478697..31478814 (25 bp)
GGGTCACCATGAAGCGATCATCGAT
LOC_Os04g53220
OsAffx.26588.1.S1_x_at--887--6431Chr04:31478808..31478829 (22 bp)
GATCATCGATGAAGTGCCAGGCAAG
LOC_Os04g53220
OsAffx.26588.1.S1_x_at--1146--6491Chr04:31480189..31480210 (22 bp)
GATAGTGCAATTACGAGCTGAGCTC
LOC_Os04g53220
OsAffx.26588.1.S1_x_at--91--9951Chr04:31480200..31480540 (25 bp)
TACGAGCTGAGCTCTCTGCAAAGGA
LOC_Os04g53220
OsAffx.26588.1.S1_x_at--549--6691Chr04:31480550..31480574 (25 bp)
GTTCCAAGCTTCATATGCCACAGTT
LOC_Os04g53220
Target Sequence 
AGCTGGAGATCACCATGGCGCTCAGCGGCTGCACGTCGGTGAAGGAGATCACGCGCGGCCACGTCGTCACCGAGAGCGAC
AGGATCCGCCGTTGTTCTCGGCTATGGAGATGGTTGTGTTTTTTTAGAAACTTAGTACAATCAGGCATGTGGAGAATGGT
GGTGCTGCAACCAGATCCGTTTCTGAGCGAGTTGACGAGCATGTACGAGCGGAGCACGGAGAAGGGATCTGTCTGGGTCA
CCATGAAGCGATCATCGATGAAGTGCCAGGCAAGGTTGAAGAAGATGGCGGCGAAGGGAGAGGCAGTGGAGTACCGGTGC
CTCGTCCGTGCCACCGATGGCAAGAAGAACATCTGCACCGCGGGGTCGATAGTGCAATTACGAGCTGAGCTCTCTGCAAA
GGAGTACCTGAAGTTCCAAGCTTCATATGCCACAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26588.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis