Browse Element(s) Details


OsAffx.26632.2.S1_x_at

Description tigr:9632.m05491
TID=OsAffx.26632.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g529008/11hypothetical protein
LOC_Os12g301206/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52860Os.53604.1.S1_at11/113+30266016..30269519Lipoxygenase 2, putative, expressed
LOC_Os03g52870Os.49820.1.S1_at11/113+30270026..30272200transducin family protein, putative, expressed
LOC_Os03g52880OsAffx.28901.3.S1_at11/113+30276579..30279144transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g52880OsAffx.24626.1.S1_x_at1/113+30276579..30279144transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g52880OsAffx.28901.2.S1_x_at1/113+30276579..30279144transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g52890OsAffx.25692.1.S1_at11/113+30282752..30283147hypothetical protein
LOC_Os03g52900OsAffx.26632.1.S1_x_at10/113+30285144..30289720hypothetical protein
LOC_Os03g52900OsAffx.26632.1.S1_at10/113+30285144..30289720hypothetical protein
LOC_Os03g52900OsAffx.26632.2.S1_at8/113+30285144..30289720hypothetical protein
LOC_Os03g52900OsAffx.26632.2.S1_x_at8/113+30285144..30289720hypothetical protein
LOC_Os03g52910Os.51226.1.S1_at11/113+30299751..30301508expressed protein
LOC_Os03g52914NANA3+30302524..30303213NA
LOC_Os03g52920OsAffx.13474.1.S1_at11/113+30306356..30306982expressed protein
LOC_Os03g52930OsAffx.3592.1.S1_at11/113+30309423..30310458hypothetical protein
LOC_Os03g52930Os.46808.2.S1_x_at1/113+30309423..30310458hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26632.2.S1_x_at--490--3753Chr03:30287685..30287709 (25 bp)
CTCTAAGATGGGTTCTGGTGGTCAA
LOC_Os03g52900
OsAffx.26632.2.S1_x_at--424--3051Chr04:33368705..33368729 (25 bp)
AATCTGATGACTTGACTGTTTCTGA
NONE
OsAffx.26632.2.S1_x_at--634--2973Chr03:30287823..30287847 (25 bp)
AATGGTTGACAAGGCCCAGATTCAG
LOC_Os03g52900
OsAffx.26632.2.S1_x_at--13--1172Chr03:30287851..30287875 (25 bp)
AGTCTTGTGGCAAAGCTCTCTGCTA
LOC_Os03g52900
OsAffx.26632.2.S1_x_at--877--9512Chr03:30287867..30287891 (25 bp)
TCTCTGCTATCCCTGAGGCAGTAAT
LOC_Os03g52900
OsAffx.26632.2.S1_x_at--791--913Chr03:30287882..30287906 (25 bp)
AGGCAGTAATCTCTCCATCAAGGAA
LOC_Os03g52900
OsAffx.26632.2.S1_x_at--68--791Chr04:33368314..33368338 (25 bp)
ATGTGCTTGTTCTTCTATTAATCAA
NONE
OsAffx.26632.2.S1_x_at--1042--6853Chr03:30288181..30288205 (25 bp)
GTTTGTACCCCTAATGTTGATACTG
LOC_Os03g52900
OsAffx.26632.2.S1_x_at--71--831Chr04:33368193..33368217 (25 bp)
ATGGATTTTAGCGAGGACTGTGAGA
NONE
OsAffx.26632.2.S1_x_at--995--9834Chr03:30288320..30288344 (25 bp)
TAAATCCTATGGCATCTTCTCCTAA
LOC_Os03g52900
OsAffx.26632.2.S1_x_at--24--8513Chr03:30288329..30288353 (25 bp)
TGGCATCTTCTCCTAACTCTAAGAA
LOC_Os03g52900
Target Sequence 
CTCTAAGATGGGTTCTGGTGGTCAATTTAGTGAGAGGGGTGGTCCTTCTGCTCCCTCTTCTCAGCTAAATCTGATACCTG
AATCTGATGACTTGACTGTTTCTGATGAAGAATTTGATGGTTTAGATGAGGAGACTATAATGGTTGACAAGGCCCAGATT
CAGGAAAGTCTTGTGGCAAAGCTCTCTGCTATCCCTGAGGCAGTAATCTCTCCATCAAGGAAGAAAAATAATAGGATAAG
CGGATGTGCTTGTTCTTCTATTAATCAAGTTTGTACCCCTAATGTTGATACTGAGTCATTAGATGACCAGTTGGAGGATA
ATTTTTTACTACAACATTTATGTAGTGAAATTATGGAAGAGGTCATGGATTTTAGCGAGGACTGTGAGAATAGTCTTAAA
AACACTTTAAATCCTATGGCATCTTCTCCTAACTCTAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26632.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis