Browse Element(s) Details


OsAffx.26637.2.S1_x_at

Description tigr:9635.m03945
TID=OsAffx.26637.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3954010/11hypothetical protein
LOC_Os04g566002/11hypothetical protein
LOC_Os04g464302/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39490NANA7+23663330..23664122hypothetical protein
LOC_Os07g39500OsAffx.29384.3.S1_x_at10/117+23666427..23668732hypothetical protein
LOC_Os07g39510OsAffx.16641.1.S1_at11/117+23671365..23674718expressed protein
LOC_Os07g39510Os.7129.1.S1_at11/117+23671365..23674718expressed protein
LOC_Os07g39510Os.27881.1.S1_s_at11/117+23671365..23674718expressed protein
LOC_Os07g39510Os.1880.1.A1_at11/117+23671365..23674718expressed protein
LOC_Os07g39520Os.16320.1.S1_at11/117+23676169..23678225Protein kinase domain containing protein, expressed
LOC_Os07g39530Os.54251.1.S1_at2/117+23683704..23686151NPH3 family protein, expressed
LOC_Os07g39540OsAffx.26637.2.S1_x_at10/117+23688822..23690380hypothetical protein
LOC_Os07g39540OsAffx.26637.2.S1_at10/117+23688822..23690380hypothetical protein
LOC_Os07g39540OsAffx.26637.1.S1_x_at3/117+23688822..23690380hypothetical protein
LOC_Os07g39550NANA7+23693488..23693844hypothetical protein
LOC_Os07g39560Os.47058.1.S1_at11/117+23702460..23707234RNA recognition motif family protein, expressed
LOC_Os07g39570OsAffx.5579.1.S1_at11/117+23713141..23713665hypothetical protein
LOC_Os07g39580Os.38395.5.S1_at10/117+23715289..23718608hypothetical protein
LOC_Os07g39580Os.38395.3.S1_x_at7/117+23715289..23718608hypothetical protein
LOC_Os07g39580Os.38395.2.S1_x_at5/117+23715289..23718608hypothetical protein
LOC_Os07g39580OsAffx.9103.1.S1_at1/117+23715289..23718608hypothetical protein
LOC_Os07g39580Os.38395.1.S1_at1/117+23715289..23718608hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26637.2.S1_x_at--131--8613Chr07:23688906..23688930 (25 bp)
TGGTGTCACTGGTGTTGTCCTCGAC
LOC_Os07g39540
OsAffx.26637.2.S1_x_at--118--3352Chr12:4079422..4079444 (23 bp)
CACGGAGATGTCGAGGGTGGGCTTC
NONE
OsAffx.26637.2.S1_x_at--870--6252Chr12:4079426..4079449 (24 bp)
GATGTCGAGGGTGGGCTTCGGCGGC
NONE
OsAffx.26637.2.S1_x_at--406--7573Chr07:23689660..23689684 (25 bp)
GGGCGACACTGTTCTGAAAGCAGAG
LOC_Os07g39540
OsAffx.26637.2.S1_x_at--838--10731Chr07:23689693..23689717 (25 bp)
TTGCACGGAGACAGTCGACGAGCCG
LOC_Os07g39540
OsAffx.26637.2.S1_x_at--683--1791Chr07:23689742..23689766 (25 bp)
ACCGACGAGGCGGAGTTCCTGGTGA
LOC_Os07g39540
OsAffx.26637.2.S1_x_at--916--1871Chr07:23689746..23689770 (25 bp)
ACGAGGCGGAGTTCCTGGTGAAGAT
LOC_Os07g39540
OsAffx.26637.2.S1_x_at--27--8851NONE
TGAACGGCGGAGTGAAAGTTCACTT
NONE
OsAffx.26637.2.S1_x_at--121--1052Chr11:27236039..27236060 (22 bp)
AGTGAAAGTTCACTTGTCCCTACCA
NONE
OsAffx.26637.2.S1_x_at--916--7352Chr11:27236039..27236061 (23 bp)
GTGAAAGTTCACTTGTCCCTACCAC
NONE
OsAffx.26637.2.S1_x_at--289--8972Chr11:27236039..27236062 (24 bp)
TGAAAGTTCACTTGTCCCTACCACA
NONE
Target Sequence 
TGGTGTCACTGGTGTTGTCCTCGACGGTCGGTGGCGGCACGGAGATGTCGAGGGTGGGCTTCGGCGGCGCCGATCGAGGA
TGGGGCGACACTGTTCTGAAAGCAGAGATTGGTGGTTGCACGGAGACAGTCGACGAGCCGGAGATTGGGGGCGGCACGGA
GGAGACCGACGAGGCGGAGTTCCTGGTGAAGATCGGGGGCGGTGCGGAGGAGACCAGCGAGAAGGGCGATGAACGGCGGA
GTGAAAGTTCACTTGTCCCTACCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26637.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis