Browse Element(s) Details


OsAffx.26640.1.S1_at

Description tigr:9632.m05536
TID=OsAffx.26640.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5678011/11Homeobox domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56740Os.5514.1.S1_at11/114+33620948..33626839IQ calmodulin-binding motif family protein, expressed
LOC_Os04g56750Os.6398.1.S1_at11/114+33629552..33634920Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os04g56760OsAffx.4196.1.S1_s_at11/114+33635333..33637490PHD finger-like domain protein 5A, putative, expressed
LOC_Os04g56770OsAffx.14441.1.S1_at10/114+33637664..33639994hypothetical protein
LOC_Os04g56780OsAffx.26640.1.S1_at11/114+33641309..33642359Homeobox domain containing protein
LOC_Os04g56790Os.15045.1.S1_at11/114+33650009..33653836TLD family protein, expressed
LOC_Os04g56800OsAffx.4197.1.S1_x_at10/114+33654393..33657050Peptidyl-prolyl cis-trans isomerase 1, putative, expressed
LOC_Os04g56810OsAffx.14442.1.S1_at11/114+33658435..33658926hypothetical protein
LOC_Os04g56820OsAffx.14443.1.S1_at11/114+33663112..33663546hypothetical protein
LOC_Os04g56830OsAffx.4198.1.S1_at11/114+33665745..33666089hypothetical protein
LOC_Os04g56840Os.57058.1.S1_at11/114+33666474..33667985expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009943biological_processadaxial/abaxial axis specification
GO:0009947biological_processcentrolateral axis specification
GO:0009965biological_processleaf morphogenesis
GO:0016049biological_processcell growth
GO:0019827biological_processstem cell maintenance
GO:0045449biological_processregulation of transcription
GO:0048314biological_processembryo sac morphogenesis
GO:0048366biological_processleaf development
GO:0048437biological_processfloral organ development
GO:0048446biological_processpetal morphogenesis
GO:0048482biological_processovule morphogenesis
GO:0051301biological_processcell division
GO:0005634cellular_componentnucleus
GO:0048353cellular_componentprimary endosperm nucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26640.1.S1_at--379--9051Chr04:33641798..33641822 (25 bp)
TGCAGACGGATCAGGCCAACGTCGT
LOC_Os04g56780
OsAffx.26640.1.S1_at--302--7091Chr04:33641775..33641799 (25 bp)
GTCAACTGGGACTGCACCGCCATGG
LOC_Os04g56780
OsAffx.26640.1.S1_at--649--3411Chr04:33641755..33641779 (25 bp)
CATGGCAGCCGAGAAAACCTTCCTG
LOC_Os04g56780
OsAffx.26640.1.S1_at--467--4491Chr04:33641751..33641772 (22 bp)
GCCGAGAAAACCTTCCTGCAGGACT
LOC_Os04g56780
OsAffx.26640.1.S1_at--609--3351Chr04:33641444..33641468 (25 bp)
CACCATTACGGTCCAGCAGCATTTG
LOC_Os04g56780
OsAffx.26640.1.S1_at--362--9931Chr04:33641438..33641462 (25 bp)
TACGGTCCAGCAGCATTTGCAGCAG
LOC_Os04g56780
OsAffx.26640.1.S1_at--368--4951Chr04:33641426..33641450 (25 bp)
GCATTTGCAGCAGCACAACTTTTAC
LOC_Os04g56780
OsAffx.26640.1.S1_at--689--1691Chr04:33641389..33641413 (25 bp)
AGCCAGCTGCACAGCCAGGATGGGC
LOC_Os04g56780
OsAffx.26640.1.S1_at--910--791Chr04:33641370..33641394 (25 bp)
ATGGGCCGGCAGCAGGCACATCCCT
LOC_Os04g56780
OsAffx.26640.1.S1_at--49--5071Chr04:33641362..33641386 (25 bp)
GCAGCAGGCACATCCCTGGAGCTCA
LOC_Os04g56780
OsAffx.26640.1.S1_at--784--8531Chr04:33641346..33641370 (25 bp)
TGGAGCTCACTCTCAGCTCCTACTA
LOC_Os04g56780
Target Sequence 
TGCAGACGGATCAGGCCAACGTCGTCAACTGGGACTGCACCGCCATGGCAGCCGAGAAAACCTTCCTGCAGGACTACATG
GGCGTGAGCGGCGTCGGTTGCGCCGCCGGGGCGGCCCCGACGCCGTGGGCGATGACGACGACGACTCGCGAGCCCGAGAC
GCTTCCACTCTTCCCAGTCGTCTTCGTCGGCGGCGACGGCGCGCATCGTCACGCCGTCCACGGCGGTTTCCCGTCCAACT
TCCAGCGCTGGGGTTCTGCTGCTGCTACCTCCTACACCATTACGGTCCAGCAGCATTTGCAGCAGCACAACTTTTACAGC
AGCAGCAGCAGCCAGCTGCACAGCCAGGATGGGCCGGCAGCAGGCACATCCCTGGAGCTCACTCTCAGCTCCTACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26640.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis