Browse Element(s) Details


OsAffx.26645.1.S1_at

Description tigr:9632.m05598
TID=OsAffx.26645.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to F2401.15
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5736010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57310Os.15283.1.S1_at11/114+33900474..33904540Uncharacterized conserved protein, putative, expressed
LOC_Os04g57320Os.25587.1.S1_s_at10/114+33903833..33906854Immutans protein, putative, expressed
LOC_Os04g57320Os.25587.1.S1_at9/114+33903833..33906854Immutans protein, putative, expressed
LOC_Os04g57320Os.25587.3.S1_x_at6/114+33903833..33906854Immutans protein, putative, expressed
LOC_Os04g57330Os.13987.1.S1_at11/114+33908934..33912073expressed protein
LOC_Os04g57340NANA4+33914656..33915517AP2 domain containing protein, expressed
LOC_Os04g57350Os.18279.1.S1_at11/114+33919168..33923078EH-domain containing protein 1, putative, expressed
LOC_Os04g57360Os.54317.1.S1_at11/114+33923478..33926185expressed protein
LOC_Os04g57360OsAffx.26645.1.S1_at10/114+33923478..33926185expressed protein
LOC_Os04g57370Os.22450.1.S1_at11/114+33929122..33931657Phospholipase/Carboxylesterase family protein, expressed
LOC_Os04g57380Os.57028.1.S1_at11/114+33931853..33933371Phospholipase/Carboxylesterase family protein, expressed
LOC_Os04g57390OsAffx.14457.1.S1_at11/114+33934285..33935850Phospholipase/Carboxylesterase family protein, expressed
LOC_Os04g57400Os.5851.1.S1_at11/114+33936430..339396275-methylthioribose kinase family protein, expressed
LOC_Os04g57410Os.5851.1.S1_at4/114+33942669..339453015-methylthioribose kinase family protein
LOC_Os04g57420Os.48312.1.S1_at11/114+33947430..33950345Reticulon family protein, expressed
LOC_Os04g57420Os.56185.1.S1_at1/114+33947430..33950345Reticulon family protein, expressed
LOC_Os04g57420Os.56185.1.S1_x_at1/114+33947430..33950345Reticulon family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26645.1.S1_at--276--1031NONE
AGGTCAAGCCTGACTGTCACTGTTA
NONE
OsAffx.26645.1.S1_at--960--1671Chr04:33925907..33925931 (25 bp)
AGCCTGACTGTCACTGTTATCGTAG
LOC_Os04g57360
OsAffx.26645.1.S1_at--1139--3831Chr04:33925914..33925938 (25 bp)
CTGTCACTGTTATCGTAGTACTACA
LOC_Os04g57360
OsAffx.26645.1.S1_at--784--2011Chr04:33925933..33925957 (25 bp)
ACTACAGTACGAGATGAAGGACAGG
LOC_Os04g57360
OsAffx.26645.1.S1_at--1149--6671Chr04:33925964..33925988 (25 bp)
GTTGCTGACAATTTATGGGCTCTGC
LOC_Os04g57360
OsAffx.26645.1.S1_at--460--3131Chr04:33925973..33925997 (25 bp)
AATTTATGGGCTCTGCACTGCACCT
LOC_Os04g57360
OsAffx.26645.1.S1_at--829--3331Chr04:33925988..33926012 (25 bp)
CACTGCACCTCTCTCTGTAGAGAGA
LOC_Os04g57360
OsAffx.26645.1.S1_at--243--5591Chr04:33926081..33926105 (25 bp)
GAAATGCTGCATTTGATGGCTACTA
LOC_Os04g57360
OsAffx.26645.1.S1_at--676--6231Chr04:33926095..33926119 (25 bp)
GATGGCTACTACTGATGTTTTCGAT
LOC_Os04g57360
OsAffx.26645.1.S1_at--1108--6271Chr04:33926108..33926132 (25 bp)
GATGTTTTCGATCGGCAGTTTGGCA
LOC_Os04g57360
OsAffx.26645.1.S1_at--449--10391Chr04:33926112..33926136 (25 bp)
TTTTCGATCGGCAGTTTGGCAGGCG
LOC_Os04g57360
Target Sequence 
AGGTCAAGCCTGACTGTCACTGTTATCGTAGTACTACAGTACGAGATGAAGGACAGGAAGCAGGTTGCTGACAATTTATG
GGCTCTGCACTGCACCTCTCTCTGTAGAGAGATCAACAAGCTGCAGCACGGAGAGGCAGAGGCAGAGGCCGGTTGGAAAA
AGAAACGAGACGTACAAGAAGAAATGCTGCATTTGATGGCTACTACTGATGTTTTCGATCGGCAGTTTGGCAGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26645.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis