Browse Element(s) Details


OsAffx.26711.2.S1_at

Description tigr:9633.m00256
TID=OsAffx.26711.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0333010/11hypothetical protein
LOC_Os01g122301/11Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03290NANA5+1310987..1314318transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g03299NANA5+1318721..1318933hypothetical protein
LOC_Os05g03310OsAffx.26711.1.S1_at11/115+1323325..1325532hypothetical protein
LOC_Os05g03320Os.54486.1.S1_at11/115+1326518..1332705expressed protein
LOC_Os05g03320Os.38233.1.S2_at1/115+1326518..1332705expressed protein
LOC_Os05g03330OsAffx.26711.2.S1_at10/115+1337065..1339039hypothetical protein
LOC_Os05g03339NANA5+1343431..1343643hypothetical protein
LOC_Os05g03350NANA5+1353872..1355110retrotransposon protein, putative, unclassified
LOC_Os05g03360NANA5+1355741..1361890retrotransposon protein, putative, unclassified
LOC_Os05g03370Os.20602.2.S1_x_at11/115+1363116..1366692transposon protein, putative, unclassified
LOC_Os05g03370OsAffx.18542.1.S1_x_at5/115+1363116..1366692transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26711.2.S1_at--602--3671NONE
CTTTACCATGAGCTGATGCGGAAAT
NONE
OsAffx.26711.2.S1_at--231--6351Chr05:1337429..1337453 (25 bp)
GATGCGGAAATATCAACAGATCATT
LOC_Os05g03330
OsAffx.26711.2.S1_at--1058--2471Chr05:1337415..1337439 (25 bp)
AACAGATCATTCACTGCAGCCACAG
LOC_Os05g03330
OsAffx.26711.2.S1_at--997--4391Chr05:1337397..1337421 (25 bp)
GCCACAGTAAAGAAACCGTGCGGTT
LOC_Os05g03330
OsAffx.26711.2.S1_at--525--2611Chr05:1337384..1337408 (25 bp)
AACCGTGCGGTTAGAAAGAGTGACA
LOC_Os05g03330
OsAffx.26711.2.S1_at--421--7371Chr05:1337365..1337389 (25 bp)
GTGACATACAAGCAGTACAGCTCTT
LOC_Os05g03330
OsAffx.26711.2.S1_at--678--7031Chr05:1337167..1337375 (25 bp)
GTACAGCTCTTGCAATATTGTTCAG
LOC_Os05g03330
OsAffx.26711.2.S1_at--162--10491Chr05:1337147..1337171 (25 bp)
TTCAGACAAGTCCTAACTCAACGAG
LOC_Os05g03330
OsAffx.26711.2.S1_at--643--9811Chr05:1337134..1337158 (25 bp)
TAACTCAACGAGCAAACACATCATA
LOC_Os05g03330
OsAffx.26711.2.S1_at--33--2192Chr05:1337119..1337143 (25 bp)
ACACATCATAACTGCATTTTCCCCA
LOC_Os05g03330
OsAffx.26711.2.S1_at--464--4211Chr05:1337099..1337123 (25 bp)
CCCCACAAATTCTGCAAGTTGCAGA
LOC_Os05g03330
Target Sequence 
CTTTACCATGAGCTGATGCGGAAATATCAACAGATCATTCACTGCAGCCACAGTAAAGAAACCGTGCGGTTAGAAAGAGT
GACATACAAGCAGTACAGCTCTTGCAATATTGTTCAGACAAGTCCTAACTCAACGAGCAAACACATCATAACTGCATTTT
CCCCACAAATTCTGCAAGTTGCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26711.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis