Browse Element(s) Details


OsAffx.2672.1.S1_at

Description tigr:9630.m01768
TID=OsAffx.2672.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1867011/11ABC transporter family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g18630Os.54656.1.S1_at11/112+10857584..10859010F-box domain containing protein, expressed
LOC_Os02g18640Os.56259.1.S1_at11/112+10861340..10862860F-box domain containing protein, expressed
LOC_Os02g18650Os.54891.1.S1_at11/112+10864067..10867220Pectinesterase-2 precursor, putative, expressed
LOC_Os02g18660Os.6598.1.S1_at11/112+10870288..10874504expressed protein
LOC_Os02g18670OsAffx.2672.1.S1_at11/112+10880661..10886276ABC transporter family protein
LOC_Os02g18679NANA2+10894992..10895925NA
LOC_Os02g18690OsAffx.2671.1.S1_x_at11/112+10897363..10901911BURP domain containing protein, expressed
LOC_Os02g18700OsAffx.2672.2.S1_at11/112+10908429..10916388multidrug resistance associated protein 2, putative
LOC_Os02g18700OsAffx.4421.1.S1_at1/112+10908429..10916388multidrug resistance associated protein 2, putative

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Gene Ontology Classification
GO idTypeName
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2672.1.S1_at--1067--6551Chr02:10881497..10881521 (25 bp)
GATTCAAGCGCTATTCCGTATTGTC
LOC_Os02g18670
OsAffx.2672.1.S1_at--512--2671Chr02:10881492..10881516 (25 bp)
AAGCGCTATTCCGTATTGTCGAGCC
LOC_Os02g18670
OsAffx.2672.1.S1_at--899--10211Chr02:10881486..10881510 (25 bp)
TATTCCGTATTGTCGAGCCATCTAT
LOC_Os02g18670
OsAffx.2672.1.S1_at--947--8711Chr02:10881476..10881500 (25 bp)
TGTCGAGCCATCTATTGGGCAAGTG
LOC_Os02g18670
OsAffx.2672.1.S1_at--649--6491Chr02:10881449..10881473 (25 bp)
GATAGACGGCCTTGATATCTGCACC
LOC_Os02g18670
OsAffx.2672.1.S1_at--76--1951Chr02:10881444..10881468 (25 bp)
ACGGCCTTGATATCTGCACCATTGG
LOC_Os02g18670
OsAffx.2672.1.S1_at--21--5511Chr02:10881228..10881340 (25 bp)
GAACAAATTTGGGAGGCATTGAACT
LOC_Os02g18670
OsAffx.2672.1.S1_at--600--691Chr02:10881174..10881197 (24 bp)
ATGAGCTCAAGCTTGACTCTGCAGT
LOC_Os02g18670
OsAffx.2672.1.S1_at--835--3271Chr02:10880909..10880933 (25 bp)
CAACAATTTTTCGAATGCACAGTGA
LOC_Os02g18670
OsAffx.2672.1.S1_at--630--9351Chr02:10880899..10880923 (25 bp)
TCGAATGCACAGTGATTACAATAGC
LOC_Os02g18670
OsAffx.2672.1.S1_at--1003--10011Chr02:10880878..10880902 (25 bp)
TAGCACATAGGATCGCATCTGTTCT
LOC_Os02g18670
Target Sequence 
GATTCAAGCGCTATTCCGTATTGTCGAGCCATCTATTGGGCAAGTGTTGATAGACGGCCTTGATATCTGCACCATTGGAC
TACACGACCTACGGACAAGATTGAGTATCATTCCACAAGATCCTGTGATGTTTGAGGGGACCCTACGAAATAACATTGAC
CCTTTGGAGGAGTACAGCGATGAACAAATTTGGGAGGCATTGAACTCTTGTCATCTTGGCGATGAAGTTAGAAAGAATGA
GCTCAAGCTTGACTCTGCAGTTACAGAAAATGGCAACAACTGGAGTGCAGGTCAGCGCCAGCTTGTTTGTTTGGGAAGGG
TAGTTCTAAAGAAGCGAAAGATCTTGGTTTTGGATGAAGCAACTTCTTCAGTGGATCCAATAACTGACAATTTGATTCAG
AAAACCCTGAAGCAACAATTTTTCGAATGCACAGTGATTACAATAGCACATAGGATCGCATCTGTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2672.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis