Browse Element(s) Details


OsAffx.2672.2.S1_at

Description tigr:9630.m01771
TID=OsAffx.2672.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1870011/11multidrug resistance associated protein 2, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g18670OsAffx.2672.1.S1_at11/112+10880661..10886276ABC transporter family protein
LOC_Os02g18679NANA2+10894992..10895925NA
LOC_Os02g18690OsAffx.2671.1.S1_x_at11/112+10897363..10901911BURP domain containing protein, expressed
LOC_Os02g18700OsAffx.2672.2.S1_at11/112+10908429..10916388multidrug resistance associated protein 2, putative
LOC_Os02g18700OsAffx.4421.1.S1_at1/112+10908429..10916388multidrug resistance associated protein 2, putative
LOC_Os02g18710OsAffx.12104.1.S1_at11/112+10920084..10920551hypothetical protein
LOC_Os02g18720OsAffx.24311.1.S1_at11/112+10922184..10923458hypothetical protein
LOC_Os02g18730NANA2+10925193..10928745retrotransposon protein, putative, LINE subclass
LOC_Os02g18740OsAffx.32001.1.S1_at10/112+10929025..10931388retrotransposon protein, putative, unclassified
LOC_Os02g18740OsAffx.20687.1.S1_at6/112+10929025..10931388retrotransposon protein, putative, unclassified
LOC_Os02g18750OsAffx.2671.1.S1_x_at8/112+10931589..10932523expressed protein
LOC_Os02g18750Os.54814.1.S1_at8/112+10931589..10932523expressed protein
LOC_Os02g18760OsAffx.28462.1.S1_at1/112+10934277..10938654retrotransposon protein, putative, unclassified
LOC_Os02g18770OsAffx.12105.1.S1_at11/112+10939563..10941269hypothetical protein
LOC_Os02g18770Os.57362.1.S1_at1/112+10939563..10941269hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2672.2.S1_at--736--10211Chr02:10909476..10909500 (25 bp)
TATTCCGCATCGTCGACCCATGTAT
LOC_Os02g18700
OsAffx.2672.2.S1_at--818--9411Chr02:10909467..10909491 (25 bp)
TCGTCGACCCATGTATTGGGCAAGT
LOC_Os02g18700
OsAffx.2672.2.S1_at--650--6491Chr02:10909439..10909463 (25 bp)
GATAGATGGCCTTGACATTTGCACC
LOC_Os02g18700
OsAffx.2672.2.S1_at--524--6231Chr02:10909435..10909459 (25 bp)
GATGGCCTTGACATTTGCACCATTG
LOC_Os02g18700
OsAffx.2672.2.S1_at--673--5131Chr02:10908987..10909328 (25 bp)
GCAAATCTGGGAGGCATTGGACTCT
LOC_Os02g18700
OsAffx.2672.2.S1_at--460--2731Chr02:10908680..10908704 (25 bp)
AAGCAACAATTCTCCGAATGCACGG
LOC_Os02g18700
OsAffx.2672.2.S1_at--875--2231Chr02:10908675..10908699 (25 bp)
ACAATTCTCCGAATGCACGGTGATT
LOC_Os02g18700
OsAffx.2672.2.S1_at--781--9031Chr02:10908662..10908686 (25 bp)
TGCACGGTGATTACCATAGCACATC
LOC_Os02g18700
OsAffx.2672.2.S1_at--430--151Chr02:10908653..10908677 (25 bp)
ATTACCATAGCACATCGGATCACAT
LOC_Os02g18700
OsAffx.2672.2.S1_at--191--5111Chr02:10908644..10908668 (25 bp)
GCACATCGGATCACATCAGTTCTTG
LOC_Os02g18700
OsAffx.2672.2.S1_at--288--3971Chr02:10908638..10908662 (25 bp)
CGGATCACATCAGTTCTTGATAGTG
LOC_Os02g18700
Target Sequence 
TATTCCGCATCGTCGACCCATGTATTGGGCAAGTGTTGATAGATGGCCTTGACATTTGCACCATTGGACTACATGATCTA
CGGACAAGATTGAGCATCATTCCTCAAGATCCTGTGATGTTTGAGGGGACCCTACGAAATAACATTGACCCTTTGGAGGA
GTACAGCGATGAGCAAATCTGGGAGGCATTGGACTCTTGTCATCTTGGTGATGAAGTTAGAAAGAGTGATCTCAAGCTTG
ACTCTACAGTTACAGAAAATGGCAGCAACTGGAGTGCAGGTCAGCGTCAGCTTGTTTGTTTGGGAAGGGTGGTTCTAAAG
AAGCGAAAGATCTTGGTTTTGGATGAAGCAACTTCTTCAGTGGATCCAATAACTGACAATTTGATTCAGAAAACCCTGAA
GCAACAATTCTCCGAATGCACGGTGATTACCATAGCACATCGGATCACATCAGTTCTTGATAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2672.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis