Browse Element(s) Details


OsAffx.26779.2.S1_at

Description tigr:9633.m01489
TID=OsAffx.26779.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1664011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g16600OsAffx.22947.2.S1_x_at8/115+9388858..9393435retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g16600OsAffx.22947.1.S1_x_at7/115+9388858..9393435retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g16600OsAffx.22947.3.S1_x_at5/115+9388858..9393435retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g16600OsAffx.22947.5.S1_x_at1/115+9388858..9393435retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g16610NANA5+9396669..9397868transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g16620Os.56292.1.S1_x_at1/115+9399028..9403076transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g16630Os.10825.1.S1_at8/115+9411679..9415435UPF0071 protein, putative, expressed
LOC_Os05g16640OsAffx.26779.2.S1_at11/115+9418028..9422983expressed protein
LOC_Os05g16640Os.51733.1.S1_x_at11/115+9418028..9422983expressed protein
LOC_Os05g16640OsAffx.26779.1.S1_x_at2/115+9418028..9422983expressed protein
LOC_Os05g16640Os.50315.2.A1_at1/115+9418028..9422983expressed protein
LOC_Os05g16660Os.48078.1.S1_at11/115+9428102..9433771Eukaryotic translation initiation factor 3 subunit 2, putative, expressed
LOC_Os05g16670Os.26806.1.S1_at8/115+9444846..9453161SHR5-receptor-like kinase, putative, expressed
LOC_Os05g16670Os.2550.1.S1_at1/115+9444846..9453161SHR5-receptor-like kinase, putative, expressed
LOC_Os05g16670OsAffx.29133.1.S1_x_at1/115+9444846..9453161SHR5-receptor-like kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26779.2.S1_at--90--10611Chr05:9422487..9422511 (25 bp)
TTCGTTTGACCACCCGGCCGATCAT
LOC_Os05g16640
OsAffx.26779.2.S1_at--788--6411Chr05:9422506..9422530 (25 bp)
GATCATCAGGACAAAACGACGACCG
LOC_Os05g16640
OsAffx.26779.2.S1_at--752--2591Chr05:9422520..9422544 (25 bp)
AACGACGACCGAATCGCAGTCTAGA
LOC_Os05g16640
OsAffx.26779.2.S1_at--400--531Chr05:9422532..9422556 (25 bp)
ATCGCAGTCTAGAAACGAGTCGCAG
LOC_Os05g16640
OsAffx.26779.2.S1_at--345--1271Chr05:9422711..9422735 (25 bp)
AGATAGCTCGTGATGACTACCAGAC
LOC_Os05g16640
OsAffx.26779.2.S1_at--975--7171Chr05:9422763..9422787 (25 bp)
GTCTGATGATGATCCTAGGTCTACA
LOC_Os05g16640
OsAffx.26779.2.S1_at--846--1011Chr05:9422779..9422803 (25 bp)
AGGTCTACAATTTTCAACCCTATGA
LOC_Os05g16640
OsAffx.26779.2.S1_at--804--3691Chr05:9422798..9422822 (25 bp)
CTATGATTCTATTCCTACTAGTAGT
LOC_Os05g16640
OsAffx.26779.2.S1_at--92--6951Chr05:9422818..9422842 (25 bp)
GTAGTATTCTAGTTGAACATCTGAG
LOC_Os05g16640
OsAffx.26779.2.S1_at--466--5491Chr05:9422832..9422856 (25 bp)
GAACATCTGAGAGTATTTTGGTACA
LOC_Os05g16640
OsAffx.26779.2.S1_at--806--311Chr05:9422922..9422946 (25 bp)
ATACTTCGGTACTATATTTGCCAAA
LOC_Os05g16640
Target Sequence 
TTCGTTTGACCACCCGGCCGATCATCAGGACAAAACGACGACCGAATCGCAGTCTAGAAACGAGTCGCAGGAATGTGGGA
TGCTGGAGAATAACGAGCAGGAGGTGAGTGGAAGCGTGGAAGCAGTGGAAGGGTTGCAGTCAAAGCTAACTACGGTTCTG
GATCGCCTGACAAAGTTCTCAGAGGCTTCACTGAAGCACTACGAGGAGCTCAAGCAGAATTATGAGATAGCTCGTGATGA
CTACCAGACGGGTCGATCAAATGCCCATCTTGTTTAGTCTGATGATGATCCTAGGTCTACAATTTTCAACCCTATGATTC
TATTCCTACTAGTAGTATTCTAGTTGAACATCTGAGAGTATTTTGGTACATATAGTACGTTAATGATGAGGTTGTAATAC
ATATATGTTGGGTTAAGGGTTACAGTTGCAAAAATATACTTCGGTACTATATTTGCCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26779.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis