Browse Element(s) Details


OsAffx.26784.1.S1_at

Description tigr:9633.m00739
TID=OsAffx.26784.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0823011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g08170OsAffx.8201.1.S1_x_at2/115+4431312..4440156retrotransposon protein, putative, unclassified
LOC_Os05g08170OsAffx.22699.1.S1_x_at2/115+4431312..4440156retrotransposon protein, putative, unclassified
LOC_Os05g08170OsAffx.8201.1.S1_at1/115+4431312..4440156retrotransposon protein, putative, unclassified
LOC_Os05g08170OsAffx.18069.1.S1_at1/115+4431312..4440156retrotransposon protein, putative, unclassified
LOC_Os05g08180NANA5+4440720..4442490hypothetical protein
LOC_Os05g08190OsAffx.448.1.S1_x_at1/115+4443610..4444992retrotransposon protein, putative, unclassified
LOC_Os05g08200NANA5+4445426..4448465retrotransposon protein, putative, unclassified
LOC_Os05g08210Os.54523.1.S1_at6/115+4450620..4451946retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g08220OsAffx.26189.1.A1_s_at7/115+4452354..4454549retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g08230OsAffx.26784.1.S1_at11/115+4456563..4461030hypothetical protein
LOC_Os05g08240Os.56053.1.S1_at9/115+4474335..4476358hypothetical protein
LOC_Os05g08240OsAffx.14590.1.S1_x_at8/115+4474335..4476358hypothetical protein
LOC_Os05g08250NANA5+4479053..4481635retrotransposon protein, putative, unclassified
LOC_Os05g08260NANA5+4483194..4484342retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26784.1.S1_at--691--6231Chr05:4460156..4460180 (25 bp)
GATGGCTCGATCAAGTTACTCGTCT
LOC_Os05g08230
OsAffx.26784.1.S1_at--790--6771Chr05:4460170..4460192 (23 bp)
GTTACTCGTCTTGCTCACTGAAGAA
LOC_Os05g08230
OsAffx.26784.1.S1_at--792--2591Chr05:4460413..4460437 (25 bp)
AACGACATAGTGTGGCCATGGATCC
LOC_Os05g08230
OsAffx.26784.1.S1_at--930--7531Chr05:4460424..4460448 (25 bp)
GTGGCCATGGATCCAATCACGTTGG
LOC_Os05g08230
OsAffx.26784.1.S1_at--377--2791Chr05:4460470..4460494 (25 bp)
AAGAGTTCTGCACATCAGACAAGTT
LOC_Os05g08230
OsAffx.26784.1.S1_at--1020--10491Chr05:4460493..4460517 (25 bp)
TTAAGAAGCTATCCTGATGACTGGG
LOC_Os05g08230
OsAffx.26784.1.S1_at--991--671Chr05:4460509..4460533 (25 bp)
ATGACTGGGATGACTATCGCAAAGG
LOC_Os05g08230
OsAffx.26784.1.S1_at--301--7651Chr05:4460533..4460557 (25 bp)
GGGAGTTTCTCATGTCACTTCAAAA
LOC_Os05g08230
OsAffx.26784.1.S1_at--449--2251Chr05:4460555..4460579 (25 bp)
AAATATGCACCCCAGGAGTCTGAGG
LOC_Os05g08230
OsAffx.26784.1.S1_at--632--10171Chr05:4460733..4460757 (25 bp)
TATAAGCACTTCAACGGGCTACCTG
LOC_Os05g08230
OsAffx.26784.1.S1_at--998--9771Chr05:4460842..4460864 (23 bp)
TAAGGCTGTTCTGGTGAATCGCAAA
LOC_Os05g08230
Target Sequence 
GATGGCTCGATCAAGTTACTCGTCTTGCTCACTGAAGAACGACATAGTGTGGCCATGGATCCAATCACGTTGGGATTTTC
TTATTTTATCAAACAAGAGTTCTGCACATCAGACAAGTTAAGAAGCTATCCTGATGACTGGGATGACTATCGCAAAGGGG
AGTTTCTCATGTCACTTCAAAATATGCACCCCAGGAGTCTGAGGGAATTATTCAAGAATGTGGATGGTATTGGATGGCCA
GTTAAAGACAAGTATCTACCAAAGATATTATCTGATATTGTTGAAGTTGATAGCCTGCAAGGACGAGAACATAATTTGAA
AGATTTTTCTGATTATGTTAATCTCTTAAGAAATCGTTATAAGCACTTCAACGGGCTACCTGATGAGGTTAAGGCTGTTC
TGGTGAATCGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26784.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis